Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1296 ATGGATAGGGTCTTCTCAGTGGACGAAATCCCTGACCACTTCTGGTCCTCCATCCCCTACGACACCAACCACCACCCGCCTCCTTCCAACTCCAACTCCCACATCAACCGCAGCCCTTCCGAGTGGGCCTTCCAGCGCTTCCTCCAAGAAGCTGCTCCTCCCTCTCCCCCTCACCGAAACGACGCCGTTTTCTTCATCCACGACGACGATCACACTCATCCCCACGTCACCAAGCCCGATCCGAACGACACCCTTCCTGCAGCATCTTTATCCAAGTCTCAAGATCCAGCCACTTTTGCTGATAGTGGATCGTCTAATATCTCTCAAGTTGGACCTCAGCCTTCTATAAAAGGATCTGGTACTTCTGGAAATGACCCACCTAAAATACAAGACAAAGATGCCAAAGCACCAATCGGGATACCTTCCATACCTGTCATACAAAAGAAACCCGCTGTTACAGCCAGGCCATCAACAAGTGGATCATCAAGGGAACAGTCAGATGATGAGGAAGCTGAAGGAGAGACAGATCTGAATGACAACATGGACCCTGCTGATGTAAAACGAGTAAGAAGGTTAGCCAATATTACACGTGCACCCTTTAACTTTCTGGAATATACACTAGCATTGGTGACTCTGCTGAGGGGTCAATGTAGTCATGGCAAACTATGGAATGCCGGGTGGCCTAATGACATGTTATATCTCAGGATGCTTTCAAATAGAGAGTCAGCCAGACGTTCAAGAAGAAGAAAACAAGCTCATTTAAACGAGCTGGAGACACAGGTTTCTCAATTAAGAGGTGAAAATTCTACCTTGCTAAAGCGCCTTACTGATGTAAGCCACAAGTACAATGAATCTGCTGTTGACAACAGAGTATTAAAAGCTGATGTTGAAACCTTAAGAGCAAAGGTGAAGATGGCGGAAGAAACCGTCAAAAGAATTACAGGGTTGAACCCAGTAATGCATGCCATGTCTGATTTAACATCAATGGGCATACCGACATTTGACGGAAGCCCTCCTGACACATCAGCTGATGCATCTGTCCCCGTGAGAGATGATACTCACCATCACCACCACTTCTTTCAACAAACATCAGTAATCATCACCTCCCGTACAGCGGGTGGCAGCTTGGAACACCTTCAGAAGAGGATTAGGGGTGGTGTGGATTCATGTGGTGGACCTTCTAATAATCATGAGCATTAA 1200 0.4717 MDRVFSVDEIPDHFWSSIPYDTNHHPPPSNSNSHINRSPSEWAFQRFLQEAAPPSPPHRNDAVFFIHDDDHTHPHVTKPDPNDTLPAASLSKSQDPATFADSGSSNISQVGPQPSIKGSGTSGNDPPKIQDKDAKAPIGIPSIPVIQKKPAVTARPSTSGSSREQSDDEEAEGETDLNDNMDPADVKRVRRLANITRAPFNFLEYTLALVTLLRGQCSHGKLWNAGWPNDMLYLRMLSNRESARRSRRRKQAHLNELETQVSQLRGENSTLLKRLTDVSHKYNESAVDNRVLKADVETLRAKVKMAEETVKRITGLNPVMHAMSDLTSMGIPTFDGSPPDTSADASVPVRDDTHHHHHFFQQTSVIITSRTAGGSLEHLQKRIRGGVDSCGGPSNNHEH* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1296 399 CDD bZIP_plant_GBF1 245 283 IPR045314 GO:0003700|GO:0006355
Amo09g1296 399 PANTHER BASIC LEUCINE ZIPPER 63 235 365 - -
Amo09g1296 399 PANTHER BASIC LEUCINE ZIPPER 63 88 192 - -
Amo09g1296 399 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 235 284 IPR004827 GO:0003700|GO:0006355
Amo09g1296 399 Pfam Basic leucine-zipper C terminal 298 359 IPR020983 -
Amo09g1296 399 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 235 249 IPR004827 GO:0003700|GO:0006355
Amo09g1296 399 Coils Coil 240 274 - -
Amo09g1296 399 SMART brlzneu 228 291 IPR004827 GO:0003700|GO:0006355
Amo09g1296 399 MobiDBLite consensus disorder prediction 18 41 - -
Amo09g1296 399 Gene3D - 234 286 - -
Amo09g1296 399 PANTHER BZIP TRANSCRIPTION FACTOR 88 192 - -
Amo09g1296 399 MobiDBLite consensus disorder prediction 70 182 - -
Amo09g1296 399 MobiDBLite consensus disorder prediction 84 126 - -
Amo09g1296 399 Coils Coil 289 309 - -
Amo09g1296 399 Pfam bZIP transcription factor 235 282 IPR004827 GO:0003700|GO:0006355
Amo09g1296 399 PANTHER BASIC LEUCINE ZIPPER 63 1 73 - -
Amo09g1296 399 SUPERFAMILY Leucine zipper domain 235 281 IPR046347 GO:0003700|GO:0006355
Amo09g1296 399 MobiDBLite consensus disorder prediction 22 41 - -
Amo09g1296 399 PANTHER BZIP TRANSCRIPTION FACTOR 235 365 - -
Amo09g1296 399 PANTHER BZIP TRANSCRIPTION FACTOR 1 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1296 Amo-Chr9 36772161 36776478 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1296 1 324 bZIP Transcription Factor Family AT4G02640 34.270 3.94e-33 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo09g1296 bZIP_C 9.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1296 K25784 - gmx:100170702 372.474