Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1251 ATGGGGTGTGTGATTAGCCGAGAGGTGCAATCGGGGATTGTCTCTGAGGTGAAGGAGGAGAAGGGTTTGAGTGCTGAGTTGAGCAGGAAGGTTGGTGATGTGTCTACAAGCAATATTGATGTAGGCGAGGTGGAGATTCAGAATGGCGAGAAGCAGAGGGAAAAAGAAGAGAATGGTAGCAATGATGAGCAGCCTCGGAAAGCGAGGGGCGAAAGAAGAAGATCAAAGCCAAACCCAAGGATGAGTAATCCCCCTAAGAATTTGAGGGGGGAGCAAGTAGCAGCTGGGTGGCCACCGTGGCTTACGGCAGTTTGTGGGGAAGCACTCAGTGGCTGGATTCCTCGAAAGGCTGACACATTTGAGAAAATTGATAAGATTGGTCAAGGAACATATAGTAATGTGTACAAAGCTAAGGACATGTTGACTGGTAAGATCGTTGCATTGAAGAAGGTCCGATTTGACAATTTGGAACCTGAGAGTGTCAAATTCATGGCAAGGGAGATTATTATTTTGCGAAGATTGGATCACCCCAACGTTGTAAAGCTAGAAGGTTTAGTTACATCAAGAATGTCCTTGAGTTTGTATCTCGTTTTTGATTACATGGTGCATGATTTAGCTGGTCTTGCTGCAAGCCCTGAAATAAAGTTTACAGAACCTCAGGTCAAATGTTACATGCATCAATTGTTATCAGGTCTTGAGCACTGTCATAATCGAAATGTGCTTCACCGTGATATTAAAGGATCAAATCTACTTATCGACAATGATGGAGTACTTAAGATTGCTGATTTTGGTCTTGCATCATTCTTTGATCCGAACCGCAAGCAACCCATGACTAATCGTGTAGTAACCCTTTGGTATAGACCTCCGGAGTTGCTTCTTGGTGCCACAGATTATGGTGTGGGCATTGACCTTTGGAGTGCTGGTTGCATTCTAGGAGAGCTATTGGCTGGGAAACCTATTATGCCTGGTCGTACAGAGGTGGAACAATTGCATAAGATATACAAACTTTGCGGTTCACCTTCTGATGAGTATTGGAAGAAATCAAAGTTGCCTAATGCTACCTTGTTTAAACCTAGAGAGCCATATAGGAGATGCATAAGAGAGACATTTAAAGATTTTCCACCTTCTACACTAGCCCTTATTGACACTCTTCTTGCAATTGATCCCGCTGAACGGAAGACTGCCTCATATGCTTTAAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTGATCCTTCTTGTCTTCCAAAATATCCCCCGACCAAGGAAATGGATGCTAAACGACGGGATGATGAAGCAAGGAGATTAAGAGCTGCTGGAAAAGCTCATGGGGATGGTGCAAAGAAGCATCATCGTACACGTGAACGTACTGCAAGAGCTATTGCTGCTCCTGAAGCCAATGCCGAGCTTCAACCCAACATTGATCGAAGGCGTCTCATCACTCATGCGAATGCTAAGAGCAAGAGTGAAAAGTTCCCTCCACCTCATGAAGACGGGCAACTTGGATACCCGTTGGGATCTTCAAACCATATTGATCCAGACACTCTCCCTCCTGATGTCTCTTTTGTTTCAACCACATACAACTACACAAAGGAACCATTCCAGGCATGGTCTGGTCCGATCGGTGTGCCAAAGCAGAAGAAACACAATAATGCAGGTGATGCATTGGATTTATCCAAACCACATAAAAGTGCCCTCAAGGACAAGGTTAAAGGAAAGAAAATCATAGTTTAG 1737 0.4421 MGCVISREVQSGIVSEVKEEKGLSAELSRKVGDVSTSNIDVGEVEIQNGEKQREKEENGSNDEQPRKARGERRRSKPNPRMSNPPKNLRGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDMLTGKIVALKKVRFDNLEPESVKFMAREIIILRRLDHPNVVKLEGLVTSRMSLSLYLVFDYMVHDLAGLAASPEIKFTEPQVKCYMHQLLSGLEHCHNRNVLHRDIKGSNLLIDNDGVLKIADFGLASFFDPNRKQPMTNRVVTLWYRPPELLLGATDYGVGIDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYRRCIRETFKDFPPSTLALIDTLLAIDPAERKTASYALRSEFFTTEPYACDPSCLPKYPPTKEMDAKRRDDEARRLRAAGKAHGDGAKKHHRTRERTARAIAAPEANAELQPNIDRRRLITHANAKSKSEKFPPPHEDGQLGYPLGSSNHIDPDTLPPDVSFVSTTYNYTKEPFQAWSGPIGVPKQKKHNNAGDALDLSKPHKSALKDKVKGKKIIV* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1251 578 CDD STKc_CDK9_like 120 404 - -
Amo09g1251 578 Gene3D Phosphorylase Kinase; domain 1 107 202 - -
Amo09g1251 578 MobiDBLite consensus disorder prediction 422 444 - -
Amo09g1251 578 Pfam Protein kinase domain 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g1251 578 MobiDBLite consensus disorder prediction 551 572 - -
Amo09g1251 578 PANTHER CELL DIVISION PROTEIN KINASE 47 550 - -
Amo09g1251 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Amo09g1251 578 ProSiteProfiles Protein kinase domain profile. 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g1251 578 PANTHER OS01G0367700 PROTEIN 47 550 - -
Amo09g1251 578 MobiDBLite consensus disorder prediction 19 92 - -
Amo09g1251 578 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Amo09g1251 578 MobiDBLite consensus disorder prediction 46 78 - -
Amo09g1251 578 SUPERFAMILY Protein kinase-like (PK-like) 115 411 IPR011009 -
Amo09g1251 578 MobiDBLite consensus disorder prediction 421 455 - -
Amo09g1251 578 Gene3D Transferase(Phosphotransferase) domain 1 203 443 - -
Amo09g1251 578 SMART serkin_6 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g1251 578 MobiDBLite consensus disorder prediction 541 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1251 Amo-Chr9 34314165 34320086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1251 112 442 Core Cell Cycle Gene Families AT5G10270 51.009 1.59e-116 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Amo09g1251 Pkinase 1.9e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1251 K08819 - gmx:100817289 973.385