Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1212 ATGAGGTGGCGTAGCTGCCTCCGAAGTCCGAAGCTGAAGCACTGCAACTGCGCATCTCGGCAACTATTCGCCACTGGTCCTGTACTCTGCCGCCTTCATATTAGCTCAAATCCAAATCCAAATCCAATGGCTTCGGAGAAGAAACTTGCGAATCCAATGAGAGAGATTAAGGTGCAGAAGCTCGTTCTCAACATCTCCGTGGGTGAGAGTGGAGATCGTCTCACTAGAGCCGCTAAGGTGCTAGAGCAACTTAGTGGCCAAACCCCAGTGTTTTCCAAAGCAAGATACACTGTCCGTTCCTTTGGAATTAGAAGGAATGAGAAGATTGCATGCTATGTCACTGTTCGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGTTTGAAGGTTAAAGAATACGAACTTTTGAGAAGAAACTTTTCTGAGACTGGATGCTTTGGCTTTGGTATTCAGGAGCATATCGATTTGGGAATCAAGTATGATCCTTCCACTGGTATCTATGGTATGGACTTCTTCGTTGTTTTGGAGCGACCAGGATACCGAGTTGGAAGGCGCAGGAGACAGAAGTCCCGTGTTGGAATTCAGCACAGGGTTACCAAAGAGGACGCTATGAAATGGTTCCAAGTGAAGTATGAGGGAGTTATTCTGAACAAGTCCCAACAAATCTCTTAA 672 0.4643 MRWRSCLRSPKLKHCNCASRQLFATGPVLCRLHISSNPNPNPMASEKKLANPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRQKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQIS* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1212 223 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 30 222 IPR002132 GO:0003735|GO:0005840|GO:0006412
Amo09g1212 223 PANTHER 60S RIBOSOMAL PROTEIN L11-1 30 222 - -
Amo09g1212 223 ProSitePatterns Ribosomal protein L5 signature. 81 97 IPR020929 GO:0003735|GO:0005840|GO:0006412
Amo09g1212 223 Pfam Ribosomal protein L5 51 104 IPR031310 -
Amo09g1212 223 Pfam ribosomal L5P family C-terminus 108 206 IPR031309 -
Amo09g1212 223 Gene3D - 43 219 IPR022803 -
Amo09g1212 223 SUPERFAMILY RL5-like 51 215 IPR022803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1212 Amo-Chr9 32857253 32859994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1212 43 223 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 93.370 9.42e-126 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1212 K02868 - cit:102625025 329.717