Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1128 ATGCAGAATTATCCTTCTCTCCCCTTTCTCTTTCACCTCCTTCTCTTCTTTCCCTTCATCGGAGCACAATCCGATAACAACAACCAAAACAACTCTTACTACAACCGTTTCAGCCCTTCCATGGCGATAATAGTTGTAATCCTCGTCTCCGCACTCTTCCTCATGGGATTCTTCTCCATCTACATCCGCCACTGCTCCGACTCTCCTTCCGTCAGCATCCGCCACCTTGTCGCCACCGGCAGATCCCGCCGCGGTCCACGAGGTCTCGACCCTGCCGTCATCCACTCGTTCCCAACCTTAGAATACTCAGTCGTAAAAATCCACAAGATTGGAAAGGGAGCACTCGAATGCGCAGTGTGCCTCAACGAGTTTGAAGACACTGAAACGCTGCGTTTGATTCCCAAATGCGACCACGTATTCCACCCTGAGTGTATCGACGAGTGGCTCGAGTCTCACACCACGTGTCCAGTTTGCAGAGCCGACCTCCTCCCACAACCGGGAGACTCCGTACGCGGCGCCGCCGCCGTCGTGATTTCAGAGTTGGCAAACGACCAGTTGTCCTCGCCGCGCAATTTGGAATCGCGGAACCAAAGCGACGTCGTAGTTGCTGTGGAGCAAGAAAGTGATGAGAATCTGGAGAATAATAAGAATGAAAGGGTAAGTGTTGATGATCGGGAAGTATTGTGTTTGAATATGAACCAGGCGTTGAATTTGAACCGCACCAGGGGTTCCCGGTCGGGGAGGCCGAGGAGGAAGAAGATTCTAGAACCTCAGTTGAACCGAGCGAGGAGCTTGGTTATTTTGCCGAGAGAAGGGAGCTCAAAGAGGGGTTACCGAACTGGGGGCGGAGAAGGAAGTAGTAGGGGCCGGTCTACAAGGCGGTTAGACCGGGTTTTTAAGTCGGACCGGTGGATTTTCACTATGGCGCCACCGTTTCTCGTTAGGGCGTCGTCAATTAAGTCACCACGGGTGGCTAATAGCGCCGCCGGCGGAAGTTCATCGGCTGCTCCAGCAGCTGCACCACCAGTTCTGACTGCCCCATCAGCAACATCAGAAATACACCATTTACCGGTTTAA 1077 0.5302 MQNYPSLPFLFHLLLFFPFIGAQSDNNNQNNSYYNRFSPSMAIIVVILVSALFLMGFFSIYIRHCSDSPSVSIRHLVATGRSRRGPRGLDPAVIHSFPTLEYSVVKIHKIGKGALECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLESHTTCPVCRADLLPQPGDSVRGAAAVVISELANDQLSSPRNLESRNQSDVVVAVEQESDENLENNKNERVSVDDREVLCLNMNQALNLNRTRGSRSGRPRRKKILEPQLNRARSLVILPREGSSKRGYRTGGGEGSSRGRSTRRLDRVFKSDRWIFTMAPPFLVRASSIKSPRVANSAAGGSSSAAPAAAPPVLTAPSATSEIHHLPV* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1128 358 PANTHER RING FINGER DOMAIN-CONTAINING 14 251 - -
Amo09g1128 358 SUPERFAMILY RING/U-box 112 166 - -
Amo09g1128 358 SMART ring_2 117 158 IPR001841 -
Amo09g1128 358 MobiDBLite consensus disorder prediction 324 358 - -
Amo09g1128 358 MobiDBLite consensus disorder prediction 265 294 - -
Amo09g1128 358 CDD RING-H2_EL5_like 116 159 - -
Amo09g1128 358 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 251 - -
Amo09g1128 358 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Amo09g1128 358 Pfam Ring finger domain 116 159 IPR001841 -
Amo09g1128 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 164 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1128 Amo-Chr9 28861611 28862777 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1128 7 341 Rapid Response to Elicitors AT3G05200 40.720 4.90e-67 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1128 K10664 - gmx:100810865 379.793