Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1122 ATGGATGTTAATACTACTACTACTATACCAAGTGTTGACACAAAGAGCCAGTCATACGCACAGCACCAATTGCATTCAGCAAATCATGAGCATAGCCATGCTCATCTCCCCTCCAAAACCATTCTCATAGCCATTGCAGCGGCCACCACAGTTACCGTACTTCTCACCATTTTCTTTGTCCTATTCTTGCTCCGTCGACAAAAGTCTTCCAACAAGAGTGGAGCCTGCAAGGATAAGAATCCAAGAGGGCTTCATGACACAAGCAGCAGACTCATTGCTTCAACAAAGTTGAGCATTAGTTCTAGTCCAGATGTGAAGGGAGGGTGTCTTCAAGGAGGAAACCTTAGTAGGTCACCAGCAGCACCTAAATTCAAAGGAGTACAAGTTTTCACATACAAGGAGATAGAAGTGGCCACAAATGGATTCAGTGAAGCAAATGTCATTGGTAATGGAGGGTTTGGTTTGATGTACAGAGGAGTCCTAAGTGATGGTACTTTGGCAGCAATCAAGTTGCTACGCAGAGAAGGTAAGCAAGGGGAGCGTGCCTTCAGAGTAGAGGTCGATCTCCTAAGTCGTTTGCACTCTCCATACTTGGTGGAGTTACTTGGTTATTGTGCAGACCAAAACCATAGGCTACTCATATTTGAGTACCTACCCCATGGCACACTCCATCAACATCTACACTCCCCTAAGAACCAATCTCAGTCGTTGGATTGGTGGGCCAGGATGAGGATAGCCCTTGATTGTGCAAGGGCCCTGGAGTTCATGCATGAGCACCATGCAGTCTCACCAGTGATCCACAGAGACTTCAAGAGTAGCAATGTGTTATTAGATCAAAATTTCCGTGCTAAAGTGTCAGATTTTGGGTTGGCAAAGATGGGATCAGAGAAGATGAACGGTCAAGTTTCCACCCGTGTGTTGGGGACCACTGGATATCTGGCCCCAGAGTGA 951 0.4627 MDVNTTTTIPSVDTKSQSYAQHQLHSANHEHSHAHLPSKTILIAIAAATTVTVLLTIFFVLFLLRRQKSSNKSGACKDKNPRGLHDTSSRLIASTKLSISSSPDVKGGCLQGGNLSRSPAAPKFKGVQVFTYKEIEVATNGFSEANVIGNGGFGLMYRGVLSDGTLAAIKLLRREGKQGERAFRVEVDLLSRLHSPYLVELLGYCADQNHRLLIFEYLPHGTLHQHLHSPKNQSQSLDWWARMRIALDCARALEFMHEHHAVSPVIHRDFKSSNVLLDQNFRAKVSDFGLAKMGSEKMNGQVSTRVLGTTGYLAPE* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1122 316 Gene3D Transferase(Phosphotransferase) domain 1 218 316 - -
Amo09g1122 316 MobiDBLite consensus disorder prediction 1 25 - -
Amo09g1122 316 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1-LIKE 8 316 - -
Amo09g1122 316 ProSiteProfiles Protein kinase domain profile. 142 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g1122 316 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Amo09g1122 316 SUPERFAMILY Protein kinase-like (PK-like) 122 316 IPR011009 -
Amo09g1122 316 Pfam Protein kinase domain 143 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g1122 316 PANTHER OS01G0750732 PROTEIN 8 316 - -
Amo09g1122 316 MobiDBLite consensus disorder prediction 1 31 - -
Amo09g1122 316 Gene3D Phosphorylase Kinase; domain 1 116 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1122 Amo-Chr9 28651415 28653774 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1122 126 316 Receptor kinase-like Gene Family AT3G58690 62.051 6.26e-84 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Amo09g1122 Pkinase 7e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1122 - - ahf:112710869 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0777 12 16677918 16686003 Amo09g1122 09 28651415 28653774 hybridization
Amo09g1122 09 28651415 28653774 Amo16g1478 16 26989652 26993782 PCT