Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1083 ATGGATCAAGCGCGATCATCTTCTGGGAACAACATCAACAACAACAATGGCGAGGACAATGTGGGAATTCCCGACGACCTCCGGTGCAAGCGTTCCGACGGGAAGCAGTGGCGGTGCACCGCCATGTCGATGCCGGACAAGACCGTCTGCGAGAAGCACTACATCCAGGCCAAGAAGAGGGCCGCCAATTCCGCCATGAGAGCTAACCTCAAGAAGGCTAAGCGCAAGTCTGGAGATTCCGAGGGACACCTTGAAAGCAAGAGTGACGATTTCGATATTCCTCTGTCCGCCATGAAGCACGGTGGTGGGGAGCATAGTTCTGGTGGCGGCAGCAGGTTGTTGGATAAGGTGGGGAAGAATCAGTTCAGGTATGTCCCCAAGAAGGGGGCCATGTCGGGGCGATCCTCGCTTCCCAAGCCAGATGAGGAGGATGAGGAAGATTATGAAGAAGAGGAGGAGGATGAGGAAGAGGTGGAGGAAGAGGAGGAGGGTGTGCCTCTTTATGAGGAAAATTGGACGGGTCACGAGTCGCCTGAGCTGGCTTCTGGTGGGGACTCGTCCAGGAAGAGGAGGAGCTTGGAGGCCACTAATGTCACTACTGAATACTCGGATGCAAGCACCGACTCCTCGGAGGAGACTGGTGACACTGGCGGGCAGACATGCCATCAGTGCCGGAGGAATGACAGAGACAGGGTGGTTACTTGGTGCCAGCGGTGTGATCGAAGAGGATACTGTAATAGCTGTATATCAACTTGGTACTCAGACATTTCGCTGGATGAAATTCAGAGGATGTGTCCTGCGTGCCGTGGTATTTGTAACTGTAGAGTTTGTGTACGTAGTGATAATTCAATAAAGGTTCGGATACGGGAGATACCTGTTCTAGATAAGTTACAGTATCTCCACTCGCTGTTGTCAGCAGTGCTTCCTGTAGTAAAACAGATCCACCAAGAACAGTGTTTTGAAGTTGAGCTCGAAAAGAAGTTGCGTGGTGCGGACATAGATCTTCCCCGGATAAAATTGGGGGCAGATGAACAGATGTGCTGCAATTTATGTAGGATACCCATCACTGATTATCATCGGCGCTGTCCAATTTGCTCATATGACTTGTGCCTTAATTGTTGTCATGATCTTCGAGAAGCAACTTCAGATTACAACAAAGAACCACAAACAGAATTAGCGAAAGCTTATGACCAAAACATATTAAGTAAGTTTCCTCATTGGAGATCCAATGATAATGGAAATATTCCATGCCCCCCTAAGGAATATGGTGGCTGTGGTTATTCGTCGTTAAATTTGAGCAGGATTTTCAAGAGGAATTGGGTTGCAAAGTTGGTGAAAAATGTAGAAGAAATGGTTGGTGGCTGTAAGATTAATAATGCTGATGATCTACCAGAAACTCAGTTGAATGCTGTCAGATTGCGCAAATGTTCTCATAGAGAGACTAGTGATGATAACTATCTTTATTGTCCTGCATCTGAAGATCTCATGAAAGATGGGATTGGAAATTTTAGAAAGCACTGGAAAACCGGTAAACCCATTATTGTTAAGCAAGTGTTTGATAGATCATCCTCTTCTAGCTGGGATCCGCTGGTCATCTGGAGAGGGATTCTAGAGACAACAGATGAGAAAATGAAAGATGAAAACAGAGTGGTTAGGGCCATAGATTGCTTAGATGGGTCTGAGATTGATATTGAGCTTAGTTACTTCATGACTGGTTACACTGAGGGCCGTACTCATGAAAACGGTTGGCCACAGTTATTGAAGTTGAAGGATTGGCCTTCACCTAGTGCATCTGAAGAGTTTCTCTTGTACCAAAGACCAGAATTTATCGGCAAACTGCCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGATGTAGGACCCAAGATTTATATATCTTATGGAATCAATCATGAACTTGGTAGAGGTGATTCAGTGACCAATCTCCACTTCAATATGCGGGACATGGTGTACCTTTTGGTCCATACAAGTGAAGTAATGTTGAAGGACTGGCAGAGAACTAAAATTGAAATGATCCAAAAAGAATACAAGGAGATAGAGGTGAAGGAATCACCTGGAGATAATCAAATGTGTTCTAGCAGGAGTTCACCTAACTCGGCATTTGGTACAGAAAATAATGGGCTGGATTTGGATCCAAACCTGAGTAAGTCACTGGATCAAGGGTTTGAAAATCATTCTAGTTCTGATGGGAATATGGTCAATTATGAACTTCCATTCAAACAAAATGGAAATTTCTCTGAGCAAATGCATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGATGTTCCAAAGTTGAATGAATATTTGAAAACACATTGGAATGAGTTTGGAAAGCCAGATGATATATTAAATGAATATGTTACATGGCCTCTTTATGATGGAGCTATTTTTCTTGACAGACACCAAAAAAGAAAGCTGAAGGAAGAATTTGGAGTGGAGCCCTGGTCATTTGAACAGAATTTGGGGGAAGCTATCTTTGTTCCTGCTGGTTGCCCTTTCCAGGCAAGAAATGTTCAGTCCACTGTTCAGTTGGGGCTTGATTTCTTATCTCCCGAGAGCCTGGGAGAGGCTGTTAGACTGGCAGAGGAAGTCCGCAGTCTACCTAATGAACATGAAGCAAAACCTCAAGTATTGGAGGTTGGAAAGATCTCTCTTTATGCTGCAAGTTCATCTATCAAAGAGATTCAGAAACTTGTACTTGATCCAAAGCTTGGTGCAGAGATCGGATATGGAGACCCTAATTTGACTGCAATGGTATCTGAGAATTACGAGAAGATGGTTAAGCGACGGCAGATTACTTGTGCTTGA 2877 0.446 MDQARSSSGNNINNNNGEDNVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSGDSEGHLESKSDDFDIPLSAMKHGGGEHSSGGGSRLLDKVGKNQFRYVPKKGAMSGRSSLPKPDEEDEEDYEEEEEDEEEVEEEEEGVPLYEENWTGHESPELASGGDSSRKRRSLEATNVTTEYSDASTDSSEETGDTGGQTCHQCRRNDRDRVVTWCQRCDRRGYCNSCISTWYSDISLDEIQRMCPACRGICNCRVCVRSDNSIKVRIREIPVLDKLQYLHSLLSAVLPVVKQIHQEQCFEVELEKKLRGADIDLPRIKLGADEQMCCNLCRIPITDYHRRCPICSYDLCLNCCHDLREATSDYNKEPQTELAKAYDQNILSKFPHWRSNDNGNIPCPPKEYGGCGYSSLNLSRIFKRNWVAKLVKNVEEMVGGCKINNADDLPETQLNAVRLRKCSHRETSDDNYLYCPASEDLMKDGIGNFRKHWKTGKPIIVKQVFDRSSSSSWDPLVIWRGILETTDEKMKDENRVVRAIDCLDGSEIDIELSYFMTGYTEGRTHENGWPQLLKLKDWPSPSASEEFLLYQRPEFIGKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGINHELGRGDSVTNLHFNMRDMVYLLVHTSEVMLKDWQRTKIEMIQKEYKEIEVKESPGDNQMCSSRSSPNSAFGTENNGLDLDPNLSKSLDQGFENHSSSDGNMVNYELPFKQNGNFSEQMHPGVLWDVFRRQDVPKLNEYLKTHWNEFGKPDDILNEYVTWPLYDGAIFLDRHQKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEEVRSLPNEHEAKPQVLEVGKISLYAASSSIKEIQKLVLDPKLGAEIGYGDPNLTAMVSENYEKMVKRRQITCA* 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1083 958 Pfam JmjC domain, hydroxylase 772 867 IPR003347 -
Amo09g1083 958 MobiDBLite consensus disorder prediction 1 20 - -
Amo09g1083 958 ProSiteProfiles Zinc finger RING-type profile. 221 269 IPR001841 -
Amo09g1083 958 MobiDBLite consensus disorder prediction 196 221 - -
Amo09g1083 958 MobiDBLite consensus disorder prediction 142 167 - -
Amo09g1083 958 MobiDBLite consensus disorder prediction 61 221 - -
Amo09g1083 958 Pfam WRC 24 64 IPR014977 -
Amo09g1083 958 PANTHER JMJC DOMAIN PROTEIN JMJ24 16 947 - -
Amo09g1083 958 Gene3D Cupin 483 897 - -
Amo09g1083 958 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 947 IPR045109 GO:0032454|GO:0033169
Amo09g1083 958 SMART cupin_9 602 888 IPR003347 -
Amo09g1083 958 MobiDBLite consensus disorder prediction 708 728 - -
Amo09g1083 958 ProSiteProfiles JmjC domain profile. 595 888 IPR003347 -
Amo09g1083 958 SUPERFAMILY Clavaminate synthase-like 504 891 - -
Amo09g1083 958 MobiDBLite consensus disorder prediction 72 94 - -
Amo09g1083 958 ProSiteProfiles WRC domain profile. 23 67 IPR014977 -
Amo09g1083 958 MobiDBLite consensus disorder prediction 705 728 - -
Amo09g1083 958 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 217 282 IPR018866 -
Amo09g1083 958 Coils Coil 141 161 - -
Amo09g1083 958 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1083 Amo-Chr9 26292567 26300285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1083 24 64 GRF Transcription Factor Family AT3G13960 46.341 3.13e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Amo09g1083 JmjC 2.2e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1083 K15601 - gmx:100792166 1464.51