Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1065 TATGAAATGGGTGCCAGTAACTTATCCTTCGACCAAGTGCTTGTGGAAATGCTTGAAATGGGTTTTGAGTATTCCAGCATTGTAGAAGCCATTAAAACAGTGGGTTTGTCTATTCCCAATGTTGTGGAGCATATCTTGACGGCTGGTAGTGGTAGTGGTAGAGCTACAACCAGCTCCAAAGCTTCCACTACCACCATACAGCCTTCGAAATTTCGTGCTCCTCATGGAAAAGCACTCAAGAGAAAAGCTTTGTCCTCGACCAGCCAAGTTCGGCAGTCGAGCATATTAGACCATTTTCATACCAATGATAAGTCCACTGTGTGCAATAAGATACATGATGTGGCAATTGTTGATCTAGAAATGGTGAATGAGCACGATGAGCCTATCTCTGAAATGCCTGATGATGTGACCGTGATGCCGGGGCAAATTGTAACTGCTCCAATGGAAAATTTCGTTGTTATGTCTGATTGGGAGACGAGAGTTGGTGGTCTCTTACAGAAGCATTTTGGGATTTTGTGTTTGAAGAGTTTTCAGAAGGAAGCGCTGAACGCATGGGCAGCTCATAAGGACTGCCTTGTCCTTGCTGCAACAGGATCTGGGAAATCATTGTGCTTTCAGGTTCCTGCATTGTTAACTGGGAAAGTGGTGGTTGTGATATCCCCATTAATAAGCTTGATGCATGATCAATGCTTAAAGCTAGCAAGACATGGAGTCAGCGCTTGCTTTCTTGGGTCTGGGCAACCTGACAATACTGTTGAAAAGAAAGCAATGAGAGGCATGTACAGCATAATATATGTTTGTCCAGAGACTGTCCTAAGATTAATACAACCACTGCAGAAGCTTGCAGAAAGTCGTGGTATTGCATTGTTCGCAATTGATGAGGTGCATTGTGTTTCTAAATGGGGTCATGATTTCCGTCCAGACTATAGCCGATTATCTGTGCTGAGGGAAAATTTCAGTACCAGCAAACTTAAATTCCTGGAATTTGACATACCTTTGATGGCCTTGACAGCTACAGCTACACACAGAGTTCAAGAAGATATTTTAAAATCATTACGCATGTCAAAGGAAACAATTGTTGTGCTTACATCTTTCTTTCGATCTAATTTACGCTTCATGGTAAAGCATAGTGGAACTTCACAAGCCTTTTATGAGAAAGATTTTCATGAATTGATTAAAGTATATGGTAGCAAGCTAAATTCCAATAAAAATAAAAAGTCTTTCATCTCAAAGGACTCGGATGATGTTTCCAGCAGCTCTGGTGCTGGTAGAATCTCTAATAATGATGATGTTTCTCCTTATGATGTGGATGACAACCATGATGATTATGGTGGCAGAGATGTTAATGTAATGCGCTCAGGAAACACAGACAATCTTGTAAAGGGAAAAGAGTTGTCTGTCGAGTTTCTGGAAAATGACAACGATGACTGTCAAAGCGTGGATGATTGGGATGTTACCTGTGGTGAATTTTGTGCACAATCTCCTCCGAAGGACTGGGAGTTATCTGAGATAGATGATCCACCCAAGGAACCAGAAGGAAGTCTGAAAGTACTTAAAGGTCCTTTGGAGCAAGGACCGGCAATCATATATGTACCAACGAGAAAAGAAACGCTGAAAATTGCAAAGTATCTATGCAAGTTTGGCGTGAAGGCTGCTGCCTATAATGCAGCGCTGCCCAAATCACATCTAAGAAGGGTTCACAAAGAATTTCATGAAAATACCATAGAGGTTGTTGTTGCAACAATAGCATTTGGCATGGGGATTGACAAGCCAAATGTCAGAAGAATCATCCACTATGGTTGGCCACAGAGTTTGGAAGCCTACTACCAAGAAGCTGGTCGGGCTGGTCGAGATGGGAAATTAGCAGACTGCATTCTATTTGCAAACCTAGCGAGAGTTCCATCACTTTTGCCTAGTCGAAGAAGTGAAGATCAGACAAAACAAGCATATATCATGTTGTCTGACTGTTTCAGATACGGAATGAACACGTCATGCTGTCGAGCAAAGACACTTGTGGAATACTTTGGAGAGGAATTCAGTCATAGAAAATGTCTCTTGTATGATGTTGAATCTTTTGAGTTGCTGACTAATGCTGTTGTCACTGTCTTGATGCACCCTGTTTCATGTAGATGTGATGTGTGTGTTGATGGACCGCCTCAAAGGCAGAATATGAAAGACGAGGCGTGTATATTACTACAAACTATTGCTGCTAGTCATGCATGTAGTTATTCCATGGATTTTTCATATGATGATGATGTACATCTTGAATATGGATATGGAAGACGTGGAGAGAGGTCATGTCTTAAGAATATTGTCGGAAAGATACGGGAGCAGTCTCAAAAGTTTCTAAACACTGATATATTATTGTGGAGAGGTCTCTCTCGGATTTTGGAAGCTAAAGGATACATCAGGGAGGGAGATGACAAGACCCATGTTCAGATAAAATTTCCGGAGCCAACAAAATTGGGATTGGAATTTATCAGGTCCATGAGTGAAGAAGCTTTCTATGTTTACCCAGAGGCAGATATGTTGCTTGCAGCAAAAACTCACAAACCGCATTCCTCATTACCATACTCCTCATTCTCTGAATGGGGTAAAGGTTGGGCTGATCCTGAAATCCGTCGCCAGCGTCTGGAAAGAATGCAAGTCAATAAAAAGCCAGAGACGCTGAGAAGTCCCAGGAAACATCAAAAGAGAAAAGCCAATAAAATGAAACACGATATGAGGACTTCTCGAGGAAGACTTGAAGCAAAACTCACAAAATATAAGTGA 2772 0.4163 YEMGASNLSFDQVLVEMLEMGFEYSSIVEAIKTVGLSIPNVVEHILTAGSGSGRATTSSKASTTTIQPSKFRAPHGKALKRKALSSTSQVRQSSILDHFHTNDKSTVCNKIHDVAIVDLEMVNEHDEPISEMPDDVTVMPGQIVTAPMENFVVMSDWETRVGGLLQKHFGILCLKSFQKEALNAWAAHKDCLVLAATGSGKSLCFQVPALLTGKVVVVISPLISLMHDQCLKLARHGVSACFLGSGQPDNTVEKKAMRGMYSIIYVCPETVLRLIQPLQKLAESRGIALFAIDEVHCVSKWGHDFRPDYSRLSVLRENFSTSKLKFLEFDIPLMALTATATHRVQEDILKSLRMSKETIVVLTSFFRSNLRFMVKHSGTSQAFYEKDFHELIKVYGSKLNSNKNKKSFISKDSDDVSSSSGAGRISNNDDVSPYDVDDNHDDYGGRDVNVMRSGNTDNLVKGKELSVEFLENDNDDCQSVDDWDVTCGEFCAQSPPKDWELSEIDDPPKEPEGSLKVLKGPLEQGPAIIYVPTRKETLKIAKYLCKFGVKAAAYNAALPKSHLRRVHKEFHENTIEVVVATIAFGMGIDKPNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILFANLARVPSLLPSRRSEDQTKQAYIMLSDCFRYGMNTSCCRAKTLVEYFGEEFSHRKCLLYDVESFELLTNAVVTVLMHPVSCRCDVCVDGPPQRQNMKDEACILLQTIAASHACSYSMDFSYDDDVHLEYGYGRRGERSCLKNIVGKIREQSQKFLNTDILLWRGLSRILEAKGYIREGDDKTHVQIKFPEPTKLGLEFIRSMSEEAFYVYPEADMLLAAKTHKPHSSLPYSSFSEWGKGWADPEIRRQRLERMQVNKKPETLRSPRKHQKRKANKMKHDMRTSRGRLEAKLTKYK* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1065 923 SMART helicmild6 538 619 IPR001650 -
Amo09g1065 923 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE SIM 6 912 - -
Amo09g1065 923 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 514 672 IPR001650 -
Amo09g1065 923 CDD DEXHc_RecQ 165 365 - -
Amo09g1065 923 Pfam RecQ zinc-binding 640 714 IPR032284 -
Amo09g1065 923 Gene3D - 632 834 IPR036388 -
Amo09g1065 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 223 IPR027417 -
Amo09g1065 923 MobiDBLite consensus disorder prediction 409 447 - -
Amo09g1065 923 PANTHER DNA HELICASE RECQ FAMILY MEMBER 6 912 - -
Amo09g1065 923 MobiDBLite consensus disorder prediction 891 907 - -
Amo09g1065 923 Gene3D - 502 627 IPR027417 -
Amo09g1065 923 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 358 IPR014001 -
Amo09g1065 923 SMART ultradead3 170 375 IPR014001 -
Amo09g1065 923 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 164 379 IPR004589 GO:0004386|GO:0006310
Amo09g1065 923 MobiDBLite consensus disorder prediction 908 923 - -
Amo09g1065 923 MobiDBLite consensus disorder prediction 413 427 - -
Amo09g1065 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 630 IPR027417 -
Amo09g1065 923 MobiDBLite consensus disorder prediction 431 447 - -
Amo09g1065 923 MobiDBLite consensus disorder prediction 879 923 - -
Amo09g1065 923 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 9 48 IPR015940 -
Amo09g1065 923 Pfam DEAD/DEAH box helicase 177 345 IPR011545 GO:0003676|GO:0005524
Amo09g1065 923 Pfam Helicase conserved C-terminal domain 518 618 IPR001650 -
Amo09g1065 923 Gene3D - 143 366 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1065 Amo-Chr9 25102568 25108487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1065 510 628 Eukaryotic Initiation Factors Gene Family AT5G11170 26.891 1.22e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1065 K10900 - gmx:100793222 1184.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1637 19 40411404 40416755 Amo09g1065 09 25102568 25108487 hybridization