Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1033 CAGATGATGGATCTCCTTGCAGTCAATTTGGAGGCGCGAGCCCTTGCCTGGTTCCAAATTTGGGAAAAACTCAACCCGGTAACATCCTACGAATGGCGCATTTGTGAACTTGAATCGGGCTCTGTCATCGACGCCAGTTTTAGCCTTGCCAAATTTCTCCAAGCCTTTTGGGTAATGATACAAATGCAAGAAGGGAGGCCAATAAAAGAACAAGCCACGTGGAAGAAGAAACAAATACAATTTTACAATAGAGATACATATTTATTTAGCAGGAAATCTTTTGCATCTTGGTGTACTTCACCAGTGGACGCCGATCCACACTTGCTATGGTTCTCGTATTGTGTCATGTCGCCCTACATCCGCTCCATTGGTAGAAGTTCACATAAGATGATAGAGGCAGTTATGCAATCTGCTGCAAAGGGAAAGGTCCAAACTATTCGACAGGGTTATCTCTCAAAACGATCGTCAAACTTAAGGGGAGATTGGAAGAGGAGGTTTTTTGTTCTTGATAGTCGGGGAATGCTGTATTACTACCGTAAACAAGTCAGCAAGTCATCGGGATCTAGCAGTCAACATTCTGGTCAAAGGAATAGTTCTGAGCTTGGATCTGGACTTTTAAGTCGATGGTTGTCTTCTCATCATCATGGTGGAGTACATGATGAGAAATCTGTTGCTCATCATACTGTGAACCTTCTTACATCTACAATCAAAGTTGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATCTCACCAACAAAGAACTACACTTTGCAGGCAGAGAGCGCACTGGACCAAATGGATTGGATTGAAAAGATCACAGGTGTTATTGCCTCATTGTTGAGTTCTCAGATTCCTGAAAGGTTATTACCTGCAAGTCCAATGGGAAGTGCTCATAACAGGTCTACCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTCGATCACACAGCTATTGAAGAATTTGCAGCAGAGAGAAATCCTGCTACAGCAAATGTGGACCGCAACTCGAGAAGTTTGCAGCTGCAGCGATCCGGTATTAAAACTGAGAAGCCTATTGATGTGTTGCGAAAAGTGTGTGGGAATGATAGATGTGCTGATTGTGGTGCCCCTGAACCTGATTGGGCATCACTAAATCTTGGTGTTCTTGTTTGCATCGAGTGCTCTGGTGTTCATCGAAATCTTGGTGTACACATATCAAAGGTCAGGTCACTTACGCTGGATGTTAAAGTGTGGGAACCTTCTGTAATAAGTTTGTTTCAGTCTCTGGGGAATACTTTTGCCAACTCTGTCTGGGAGGAACTATTGCAATCGAGAAGTGGCTTTCAGGTTGATCTTGTTTCTACAGGGTTAAGCAGGCCTGATAAATCACTAGCACTTTTCGTCAGCAAACCTTCTCAATCCGAGTCTCTATCTGTTAAGGAAAAGTTTATCAATGCAAAGTACGCAGAGAAGCTTTTTGTTCGCAAGCCAAAGGACAGCCAATACCGTCTACTGGTGGCGCAACAGATATGGGAAGCAGTTCGTGCTAATGACAAAAAAACCGTGTATCGATACATTGTTAATTCTGACATTGATGTCAATGCTGCTTATGAACAAATGTGTAGCAGCTCTTTAACCCTTGCTAAAGTGATGCTATTACAAGAGCAAACAAACCATGATCACGGCTCTATATCGAGAAACACATTGGACTGGTCCTCTGCTAGCTCTTTGAACGCAGGCTCTAAAGAAGGACGTGCCGTTGACAACCTAGATGGGTCTACCCTGCTTCATCTTGCTTGTGAAACTGCAGATATTGGCATGCTGGAGCTCCTTCTACAGTATGGTGCAAATGTAAATGCAACCGATTCGAGAGGTCAAACGCCATTACATCGCTGTATTCTCAAAGGCAAATCTACATTTGCAAGATTACTTCTTTCAAGGGGAGCTGATCCTCAAGCTGTAGATGATGAGGGAAGAACCCCTATTGAGCTCGCTGCGGAGTCAAATGCCGATGACAGACAAGTCCATGCTCCATCCACCGATTCTAATGGATGA 2043 0.4361 QMMDLLAVNLEARALAWFQIWEKLNPVTSYEWRICELESGSVIDASFSLAKFLQAFWVMIQMQEGRPIKEQATWKKKQIQFYNRDTYLFSRKSFASWCTSPVDADPHLLWFSYCVMSPYIRSIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQVSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERLLPASPMGSAHNRSTSESSSFESSDFDHTAIEEFAAERNPATANVDRNSRSLQLQRSGIKTEKPIDVLRKVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSGFQVDLVSTGLSRPDKSLALFVSKPSQSESLSVKEKFINAKYAEKLFVRKPKDSQYRLLVAQQIWEAVRANDKKTVYRYIVNSDIDVNAAYEQMCSSSLTLAKVMLLQEQTNHDHGSISRNTLDWSSASSLNAGSKEGRAVDNLDGSTLLHLACETADIGMLELLLQYGANVNATDSRGQTPLHRCILKGKSTFARLLLSRGADPQAVDDEGRTPIELAAESNADDRQVHAPSTDSNG* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1033 680 MobiDBLite consensus disorder prediction 298 312 - -
Amo09g1033 680 PANTHER CENTAURIN/ARF 119 673 IPR045258 GO:0005096
Amo09g1033 680 SMART PH_update 145 282 IPR001849 -
Amo09g1033 680 Pfam PH domain 146 279 IPR001849 -
Amo09g1033 680 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 119 673 - -
Amo09g1033 680 Gene3D - 497 669 IPR036770 -
Amo09g1033 680 ProSiteProfiles PH domain profile. 144 280 IPR001849 -
Amo09g1033 680 Pfam Putative GTPase activating protein for Arf 355 492 IPR001164 GO:0005096
Amo09g1033 680 ProSiteProfiles Ankyrin repeat region circular profile. 620 652 - -
Amo09g1033 680 CDD PH_ACAP 147 284 - -
Amo09g1033 680 SMART arf_gap_3 352 497 IPR001164 GO:0005096
Amo09g1033 680 MobiDBLite consensus disorder prediction 646 680 - -
Amo09g1033 680 PRINTS HIV Rev interacting protein signature 364 383 IPR001164 GO:0005096
Amo09g1033 680 PRINTS HIV Rev interacting protein signature 406 427 IPR001164 GO:0005096
Amo09g1033 680 PRINTS HIV Rev interacting protein signature 383 400 IPR001164 GO:0005096
Amo09g1033 680 MobiDBLite consensus disorder prediction 293 312 - -
Amo09g1033 680 ProSiteProfiles Ankyrin repeat profile. 587 619 IPR002110 GO:0005515
Amo09g1033 680 Gene3D - 137 289 IPR011993 -
Amo09g1033 680 ProSiteProfiles Ankyrin repeat region circular profile. 587 618 - -
Amo09g1033 680 CDD ArfGap 355 484 - -
Amo09g1033 680 SMART ANK_2a 587 616 IPR002110 GO:0005515
Amo09g1033 680 SMART ANK_2a 620 649 IPR002110 GO:0005515
Amo09g1033 680 Pfam Ankyrin repeats (many copies) 607 661 IPR002110 GO:0005515
Amo09g1033 680 SUPERFAMILY ArfGap/RecO-like zinc finger 351 492 IPR037278 -
Amo09g1033 680 Gene3D Arf GTPase activating protein 333 496 IPR038508 -
Amo09g1033 680 ProSiteProfiles ARF GTPase-activating proteins domain profile. 352 497 IPR001164 GO:0005096
Amo09g1033 680 SUPERFAMILY Ankyrin repeat 509 666 IPR036770 -
Amo09g1033 680 SUPERFAMILY PH domain-like 145 296 - -
Amo09g1033 680 ProSiteProfiles Ankyrin repeat profile. 620 652 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1033 Amo-Chr9 24288943 24305025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1033 364 491 C2H2 Transcription Factor Family AT4G21160 40.310 9.18e-21 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1033 K12489 - gmx:100789134 933.324