Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1016 ATGGCTGAGAAGAAGCTTGAACTCTTTCGTGCTGGGATGAACCCAACCTCCATTTACGCGAATGATTGTTCTTTGGAGCAAATTGTGGTGAAAGAAGGATCATCGTCAAGTATAAGTAGTAGTATCATAACAACGAAGAAGACACCCTCAAAAGAAAAAGATAATAATAAACACGAAGCGGCAGCAGCAGCATCACAATTCTCATACACATCTTTGTATAATTCATCATCGTCAGCAGCAACAACTACTTTCAAGAAACCAAGAATAGCAGACTCATCATTATTAAACCAACAAGACTTTGCAGCAGGAAAGCTCATGAATTTCTCCGCTTTTTTAAGACCTTCAATGCTTAGTCAGAATAATTCTGTTTCACGTGAGGCTGATAACAACAAAGAGGAACCGTTTCCTGAAAAGCAGTTAAAATCTGTTAGTAATAATAATAAGAGGAAAGTGGTGGATAACGGCTTCTGTAACGAACCCTTGATAGAATATTCGTCTGTGTGTTCGCTTGGAGCGTCAACAAACAATACACACATTTATAGCCGGAAACAAGACCTCCATGACTCCACCTACTTAAGCGAGAATGATGAAGACATAGAAGATGTTACGAAGGATATTAAGAATGCTCGGCGGGAGGGCAATAATGGAGTCAGAAGAAGCAGGAATGCTGAGACTCATAATTTATATGAAAGGCAGCGAAGAGACAAGATCAACAAGAAACTGCGCGTACTGAAAGATCTCATACCCAATTGTAATAAGGTAGACAAGGCTTCACTGCTTGATGATGCCATTGAATATCTTAAGGCCTTAAAACTTCATTTACAGATTATGACAATGGGAACCGGGCTATGCATGCCTCCAATGATGCTACCTACATCTTCTCCAACCCAGCAATTACAACAACAGTTAATGGGTTTGAGGCCTGGAATTAACATCCCTTGCAACATGGCTCAGTTCAATAGTATTCCACCACTACCTAATGGAGTTGGCATGTTTGGTTTCCCTAACCAATTCTTACCCGTCATTCCGCCAAATCCAATGTCTCATGCACCTTTCACTACTACTACTACTCATCCCATGCTTGGAAATAATAATAATAATAAGGCTAACAATCTTTGTACACAACCGCCACTACTTCAAACAACCAATAATATCTCAGCTCTAAAGTAG 1170 0.3991 MAEKKLELFRAGMNPTSIYANDCSLEQIVVKEGSSSSISSSIITTKKTPSKEKDNNKHEAAAAASQFSYTSLYNSSSSAATTTFKKPRIADSSLLNQQDFAAGKLMNFSAFLRPSMLSQNNSVSREADNNKEEPFPEKQLKSVSNNNKRKVVDNGFCNEPLIEYSSVCSLGASTNNTHIYSRKQDLHDSTYLSENDEDIEDVTKDIKNARREGNNGVRRSRNAETHNLYERQRRDKINKKLRVLKDLIPNCNKVDKASLLDDAIEYLKALKLHLQIMTMGTGLCMPPMMLPTSSPTQQLQQQLMGLRPGINIPCNMAQFNSIPPLPNGVGMFGFPNQFLPVIPPNPMSHAPFTTTTTHPMLGNNNNNKANNLCTQPPLLQTTNNISALK* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1016 389 PANTHER TRANSCRIPTION FACTOR PIF3 143 367 IPR044273 GO:0003700|GO:0006355
Amo09g1016 389 Coils Coil 192 212 - -
Amo09g1016 389 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 219 293 IPR036638 GO:0046983
Amo09g1016 389 CDD bHLH_AtPIF_like 221 283 - -
Amo09g1016 389 Gene3D - 212 271 IPR036638 GO:0046983
Amo09g1016 389 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 221 270 IPR011598 GO:0046983
Amo09g1016 389 Pfam Helix-loop-helix DNA-binding domain 224 270 IPR011598 GO:0046983
Amo09g1016 389 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 143 367 - -
Amo09g1016 389 MobiDBLite consensus disorder prediction 121 142 - -
Amo09g1016 389 SMART finulus 227 276 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1016 Amo-Chr9 22568561 22570944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1016 51 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 34.386 9.45e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo09g1016 HLH 7.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1016 K12126 - gmx:100818543 206.453