Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1010 AGATCACGCAGGAGACGCAGTGGAGGAAGTGATTCAGTAGAGAGTATTCTTGAGAATGAAAGAGATGAGGTTGAAGTGATTCACAAGATTCCTGCAAAGGGATCGAGAAAAGGGTGTATGAGAGGCAAAGGTGGACCACAGAATTATGATTGCAAATTCAGGGGTGTGAGACAGAAGATTTGGGGCAAATGGGTTGCAGAAATCCGCGAACCTATCAATAGCAAGCGTGTTGGTGAAAAAGCAAACAGGCTTTGGCTTGGAACCTTTTCTATTGCACTTGAAGCTGCTCTTACTTATGATGAAGTAGCAAAGACCATGTATGGCCCTGGCGCTCGTTTGAACTTTCCTCACCATTATGGCATAGAATCAGTAGGTTCTAATGGATCATCTATGAGTACAGGATTTAATCAGAAATCACCAAGTGGAACCTATGTAGATATTTTGAATGGTGGTGATGTTGCAAAAGTTGATTGGTTGGAGGAAAATCTTGATATGAGTCTCGAAGAAAAGTTTTCTCAGGCAAACGAATTATTGGAGATGGAATGTGAGAGAGGAATTCTTCAAGAGCCTTTTAAGTATGTTAAGGACGATGTTGCTGGAGGAAGTGAAGGACTAGAGGGAGAGTTAGAGGACGTTTTGAGGAACTCTGGTATAGTTGAAGAGTGTAATAATTACATGCTAGAGGATTCTATGTGCATGGCTACGAATATAGGAGCTGATTATAACTCTTGTGATAGGGGGAACCACTACTTCGGATACTTGCATAATATGATTCCAAACAGTAATCCAAAGTATGAGCAGTTCAACAATCTCAAATCTGAGGCAGCTATTCCAACAAAAGACATGGAAAAGTGTTCCGAGATGAATAATGTTCGGTCACAAATTGGTCAATTCACATATAAGCAATAT 909 0.4059 RSRRRRSGGSDSVESILENERDEVEVIHKIPAKGSRKGCMRGKGGPQNYDCKFRGVRQKIWGKWVAEIREPINSKRVGEKANRLWLGTFSIALEAALTYDEVAKTMYGPGARLNFPHHYGIESVGSNGSSMSTGFNQKSPSGTYVDILNGGDVAKVDWLEENLDMSLEEKFSQANELLEMECERGILQEPFKYVKDDVAGGSEGLEGELEDVLRNSGIVEECNNYMLEDSMCMATNIGADYNSCDRGNHYFGYLHNMIPNSNPKYEQFNNLKSEAAIPTKDMEKCSEMNNVRSQIGQFTYKQY 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1010 303 Gene3D AP2/ERF domain 51 118 IPR036955 GO:0003700|GO:0006355
Amo09g1010 303 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 287 - -
Amo09g1010 303 ProSiteProfiles AP2/ERF domain profile. 52 116 IPR001471 GO:0003700|GO:0006355
Amo09g1010 303 CDD AP2 51 118 IPR001471 GO:0003700|GO:0006355
Amo09g1010 303 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 287 - -
Amo09g1010 303 SUPERFAMILY DNA-binding domain 52 117 IPR016177 GO:0003677
Amo09g1010 303 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Amo09g1010 303 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Amo09g1010 303 Pfam AP2 domain 51 108 IPR001471 GO:0003700|GO:0006355
Amo09g1010 303 SMART rav1_2 52 122 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1010 Amo-Chr9 22489311 22490348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1010 3 116 AP2-EREBP Transcription Factor Family AT2G40340 53.906 1.48e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo09g1010 AP2 9.4e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1010 - - aip:107637982 462.996