Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0988 ATGGGTCATCTTTCTTCAATGTTCAATGGTTTGGCAAAATCACTGGCAATTAAGAAATGGAGGAATTCAGAAAGATGCAGCGGAAGAGAAGCGGCGGAAGCGATGGCAAAGGAAGCAAAAAAGAATGAGTTCTTGTTATGTAGCTCAGGCACTGTTAGTGTTGATGGCTCAAACAACTTTGCCTCAGTTTTCTCCAAAAGAGGCAAGAAAGGAGTCAATCAAGATTGCTGCATAGTCTGGGAAGAATTTGGGTGCCAAGAGGACACGATCTTCTGTGGGATCTTTGATGGGCATGGGCCATGGGGTCACTTTGTGGCGAAAAGAGTGAGAGAATCAATGCCGCCATGTTTGCTATGCAATTGGCAAGAGACTCTTTCCCAAGCTTCACTTGATCTTGACCCAGATTCTGGAGATGCCGATGTTGAGGCAGAGAAGATGCAAAACTGTTTTAACATATGGAAGCATTCCTACTTGAAGACTTGTGCTGCCATTGATCGAGAACTCCAGCAGAATCGCAAGATCGATTCGTTTTTCAGTGGAACCACTGCCCTCTCCATTGTTAGACAGGGAGAACTAATTGTGATTGCAAACGTTGGTGACTCGCGTGCTGTATTAGCTACAACATCGGATCATGGGAGTTTGGTACCAATTCAGCTCACAGTAGATTTCAAGCCCAATCTACCTCAGGAAGCAGCTCGAATACTGGAGCGCCAAGGGCGAGTCTTTTGCTTAGAAGACGAGCCGGGGGTGCACAGGGTATGGCTTCCCGACGAAGAGTCGCCGGGGCTGGCCATGTCTAGGGCACTTGGTGACTACAGCGTCAAAGAGTATGGCCTAATCTCGGTGCCTGAGGTAACCCAATGGAACGTAACCACCAGAGACCAGTTTGTTGTGCTAGCTACTGATGGGGTGTGGGATGTAATATCGAACGAAGAAGCGGTGGAGATTGTATCTTCAACAGCAGAGAGAGGAAAGTCAGCAAAACGTTTGGTGGAGTGTGCGAAGCGTTCATGGAAACGCAAGAGGGGTGGAATTGCCATGGATGACATCTCTGCCATTTGTCTTTTCTTTCACTCTCCTTGTAACCTTCTTGATAACCAACTTGCCACCCTAAACTAA 1119 0.4727 MGHLSSMFNGLAKSLAIKKWRNSERCSGREAAEAMAKEAKKNEFLLCSSGTVSVDGSNNFASVFSKRGKKGVNQDCCIVWEEFGCQEDTIFCGIFDGHGPWGHFVAKRVRESMPPCLLCNWQETLSQASLDLDPDSGDADVEAEKMQNCFNIWKHSYLKTCAAIDRELQQNRKIDSFFSGTTALSIVRQGELIVIANVGDSRAVLATTSDHGSLVPIQLTVDFKPNLPQEAARILERQGRVFCLEDEPGVHRVWLPDEESPGLAMSRALGDYSVKEYGLISVPEVTQWNVTTRDQFVVLATDGVWDVISNEEAVEIVSSTAERGKSAKRLVECAKRSWKRKRGGIAMDDISAICLFFHSPCNLLDNQLATLN* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0988 372 CDD PP2Cc 59 357 IPR001932 -
Amo09g0988 372 Gene3D - 51 359 IPR036457 -
Amo09g0988 372 SUPERFAMILY PP2C-like 54 359 IPR036457 -
Amo09g0988 372 Pfam Protein phosphatase 2C 80 330 IPR001932 -
Amo09g0988 372 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 1 360 - -
Amo09g0988 372 PANTHER ALPHABET, ISOFORM E-RELATED 1 360 - -
Amo09g0988 372 SMART PP2C_4 51 355 IPR001932 -
Amo09g0988 372 ProSiteProfiles PPM-type phosphatase domain profile. 60 357 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0988 Amo-Chr9 20825630 20830457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0988 1 358 PP2C-type Phosphatase Gene Family AT3G05640 68.889 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0988 - - gmx:100794039 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1567 19 37044955 37049474 Amo09g0988 09 20825630 20830457 hybridization
Amo16g0448 16 7212168 7215857 Amo09g0988 09 20825630 20830457 PCT
Amo01g0686 01 9783460 9784686 Amo09g0988 09 20825630 20830457 PCT
Amo09g0988 09 20825630 20830457 Amo16g0448 16 7212168 7215857 PCT