Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0974 ATGGGTCGCATGAACACCAAAGAGAAAGAGCACGATCTCGAGTTGGAAAAAGCTCGCTTGATTAGCTTAGCCCTCGATTTCGGCTTCGACCAACCCTCCGCCACCAAATGCCTCCATCGCCTCATCGACCTCTACGGGGAGGATGGTCGGGATTTCATCACGGTGGAGCACTGCGGCGACGATTTTATTGCGGCGTTGGCGGAGTCGATGGAAGATGCAGAAGAATGGGATGATTTGCAGGGACTGGAATCGGAGGCGTGTGGTGCATTGACTCAGGTGCTTCACAAGACTGGTGTTGGTGGTGGTGGTGATGGTGAGGTTTTCTGCGTTGATGCGACTGATGATTCGCCTTGGCGGCAGAAGCAGAAGGGGAAAGTGGTGGAGTTGGTTTCGAGCGAGGAGGATGAAGATAAGGATGTGGATTTCAGTTTTCTGATGGGAAGAGGGAATTGTGTCACTCCTGCTTCTGCGAAATCAATGGATTGCAGAAGTGGCATCACTCAAGGCTCAATTTCATCCACATCCAGCAAAACAAAATTCTACTCAGCATCAAAGGAAGAAAATAATACTCTTAGCTATGACGAATTGCAGGCTCTAGATGATATTGAATTGGCAAATGTCGTTATCTTTGGTAATAGGGCATTTCGACCATTGCAGCATCAAGCATGCAAAGTAACTCTGGCAAAGCAAGATTCTTTTATCCTTATGCCTACTGGAGGTGGTAAATCTCTATGCTATCAGCTTCCAGCAACACTTCAACCAGGTGTTACAGTAGTTATATCTCCCTTACTTTCACTCATTCAGGATCAGATAATCACACTAAACCTTAAGTTTGGTATACCTGCTACTTTCTTAAATTCTCAACAAACTGCTTCCCAAGCAGCAGCTGTCCTCCAAGAGCTAAGGCAAGACAGAACACGGAAAGACAAACCATCTTGCAAGCTATTGTATGTGACACCTGAGAGAATTGCTGGCAACCAACCATTTATTGAGATTCTTAAATGCCTGCATCGCAAGGGACAACTTGCAGGTTTTGTTGTTGATGAAGCACACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGACTACCGTGGATTAGGATCACTTAAGCAAAACTTTCCTCGTGTACCTGTCATGGCATTGACAGCAACTGCAACCCACTCAGTTCGTGAGGACATTTTGAATGCTTTAAGAATCCCCCATGCACTTGTTCTTGAAAGAAGTTTTGACAGACCAAACTTAAAGTATGAAGTGATTGCAAAGACTAAGGAACCGCTGAAGCAGCTGGGACAGCTGCTAGTGGATCGTTTCAGGAATCAATGTGGAATTGTTTACTGCCTCTCGAAAAGTGAATGTGTCGAGGTCTCAAAATTTTTGAATGAGACATGTCAGACTAAAACGGCGTATTACCATGCTGGCATGGCTGCCCGCCAAAGAGTTGCTGTTCAAAGGAAATGGCATGATGGAGAGGTTCATGTTGTCTGTGCAACTATTGCTTTCGGAATGGGGATAGACAAATCTGATGTTCGCTTCGTTGTCCATAATACAATGTCAAAATCAGTTGAAAGTTATTATCAAGAATCAGGAAGGGCCGGAAGAGATAATCTTCCTGCAGTTTGCATTGTATTGTACCAGAAGAAGGATTTCAGCCGAGTAGTATGCATGATAAGAAATGGTCAAGGATATAAAAAGGAGAGCTTTAAGACAGCAATGGATCAAGCGAAAAAGATGCAACAGTACTGTGAACTTAAGGCAAGGCAAACTCCCCTATATTTCAGCATCTTTTTCTTTAGTCAATTTATAGCACCTTTGAAAATAGGATAA 1827 0.4417 MGRMNTKEKEHDLELEKARLISLALDFGFDQPSATKCLHRLIDLYGEDGRDFITVEHCGDDFIAALAESMEDAEEWDDLQGLESEACGALTQVLHKTGVGGGGDGEVFCVDATDDSPWRQKQKGKVVELVSSEEDEDKDVDFSFLMGRGNCVTPASAKSMDCRSGITQGSISSTSSKTKFYSASKEENNTLSYDELQALDDIELANVVIFGNRAFRPLQHQACKVTLAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVISPLLSLIQDQIITLNLKFGIPATFLNSQQTASQAAAVLQELRQDRTRKDKPSCKLLYVTPERIAGNQPFIEILKCLHRKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQNFPRVPVMALTATATHSVREDILNALRIPHALVLERSFDRPNLKYEVIAKTKEPLKQLGQLLVDRFRNQCGIVYCLSKSECVEVSKFLNETCQTKTAYYHAGMAARQRVAVQRKWHDGEVHVVCATIAFGMGIDKSDVRFVVHNTMSKSVESYYQESGRAGRDNLPAVCIVLYQKKDFSRVVCMIRNGQGYKKESFKTAMDQAKKMQQYCELKARQTPLYFSIFFFSQFIAPLKIG* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0974 608 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 209 582 IPR004589 GO:0004386|GO:0006310
Amo09g0974 608 PANTHER DNA HELICASE RECQ FAMILY MEMBER 33 585 - -
Amo09g0974 608 Pfam Helicase conserved C-terminal domain 429 535 IPR001650 -
Amo09g0974 608 PANTHER BLOOM SYNDROME PROTEIN 33 585 - -
Amo09g0974 608 Gene3D - 172 411 IPR027417 -
Amo09g0974 608 CDD DEXHc_RecQ 209 411 - -
Amo09g0974 608 Pfam DEAD/DEAH box helicase 217 390 IPR011545 GO:0003676|GO:0005524
Amo09g0974 608 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 223 404 IPR014001 -
Amo09g0974 608 SMART helicmild6 454 536 IPR001650 -
Amo09g0974 608 Gene3D - 412 599 IPR027417 -
Amo09g0974 608 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 343 352 IPR002464 -
Amo09g0974 608 CDD SF2_C_RecQ 412 545 - -
Amo09g0974 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 557 IPR027417 -
Amo09g0974 608 SMART ultradead3 211 420 IPR014001 -
Amo09g0974 608 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 426 579 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0974 Amo-Chr9 20201269 20205174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0974 444 534 Eukaryotic Initiation Factors Gene Family AT5G11170 30.769 3.04e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0974 K10899 - gmx:100806070 871.307