Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0969 ATGGCGACGAGGAATCGCACTCTTCTCTTCAGAAAGCACCGCGACGCATTGAAGAGCGTTCGCGCTCCTTCCTCCTCTTCCCTCCCCTCCACCTCCTCCGCCGGTGGCAGAGGGGGTGCCGCCGGACCCGTCATCGAATTGGTCAGCTCGTCGCTCCTCAACCCTAATCGTTCTTACGCCCCTCTAAGCACCGACGATCCCGGTAGCTCAAGTAAGGATCTAAATCTGGTTACAGTTGGATTACCGCCAGCATGGGTGGATGTGTCTGAAGAAATATCAGCAAATGTGCAGCGCGCCAGAACAAAAATGGCAGAGTTGGCCAAGGCTCATGCAAAGGCTTTAATGCCATCATTTGGTGACGGTAAGGAAGAACAACGTGCTATCGAGTCCCTAACATATGAGATAACTGACTTGATAAAGAGATCAGAGAAGAGACTGCAGAGACTTTCTGCTGGTGGGCCATCTGAGGATTCCAACGTGAGGAAGAATGTGCAGCGTTCTCTTGCTACCGACCTTCAGAACTTGTCTGTAGAGCTCCGCAAGAAACAATCAACATATTTGAAGCGCCTAAGGCAACAAAAGGAGGGTCCAGACGGGGTTGATTTAGAGATCAACATGAATGGAAGTAAATCCACATATGAAGATGATGACCTGGATAATATGATATTTAATGAACATCAAATGGCCAAGCTGAAGAAAACTGAAGCATTCACAGTGGAAAGAGAAAAAGAAATTCAGCAGGTTGTAGAATCTGTAAACGAGCTTGCTCAAATTATGAAGGATTTATCAGTCCTAGTCATTGACCAGGGTACGATTGTTGATAGAATAGACTACAACATTCAGAATGTAGCCACTACAGTTGAAGATGGCCTTAAACAGCTTCAGAAGGCAGAGAGAAACCAGAAAAAGGGGGGCATGGTGATGTGTGCGACGGTGCTGCTCATCATGTGCCTTGTTATGTTGGTTCTATTAATCCTTAAGGAAATTATCTTGTGA 996 0.4659 MATRNRTLLFRKHRDALKSVRAPSSSSLPSTSSAGGRGGAAGPVIELVSSSLLNPNRSYAPLSTDDPGSSSKDLNLVTVGLPPAWVDVSEEISANVQRARTKMAELAKAHAKALMPSFGDGKEEQRAIESLTYEITDLIKRSEKRLQRLSAGGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSTYLKRLRQQKEGPDGVDLEINMNGSKSTYEDDDLDNMIFNEHQMAKLKKTEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERNQKKGGMVMCATVLLIMCLVMLVLLILKEIIL* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0969 331 Gene3D - 82 289 - -
Amo09g0969 331 Coils Coil 89 109 - -
Amo09g0969 331 PANTHER SYNTAXIN 1 326 IPR045242 -
Amo09g0969 331 MobiDBLite consensus disorder prediction 18 40 - -
Amo09g0969 331 SMART SynN_4 76 191 IPR006011 GO:0016020
Amo09g0969 331 ProSitePatterns Syntaxin / epimorphin family signature. 241 280 IPR006012 GO:0005484|GO:0006886|GO:0016020
Amo09g0969 331 MobiDBLite consensus disorder prediction 20 34 - -
Amo09g0969 331 PANTHER TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 326 - -
Amo09g0969 331 CDD SNARE_syntaxin16 240 296 - -
Amo09g0969 331 Coils Coil 280 300 - -
Amo09g0969 331 SMART tSNARE_6 230 297 IPR000727 -
Amo09g0969 331 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 235 297 IPR000727 -
Amo09g0969 331 SUPERFAMILY t-snare proteins 81 290 IPR010989 GO:0016020|GO:0016192
Amo09g0969 331 Pfam SNARE domain 271 323 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0969 Amo-Chr9 19322953 19328841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0969 1 331 SNARE and Associated Proteins AT5G26980 76.435 0.0 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0969 K08489 - gmx:100796741 514.998