LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo09g0952	GAATGCAAGCCTTGGTGGGAGATTGGAAATGATCTCTCCCAGTTTTTGGGCCCACTAATATTGAATCAGCTGCTAGAGTCTATGCAAAATGGTGATCCAGCCTGGATTGGATACGTCTTTGGGGTGTTATGTGAAGCTCAATATTTTCAGAATGTCATGCGTGTTGGATTCCGGCTAAGATCAACACTGGTAGCTACTGTATTTCGCAAATCATTAAGGCTTACCCATGAAGCTCGAAAGCAATTTGCATCTGGAAAAATAACCAATGTGATGACTACTGATGCCGAAGCACTTCAGGCATGGTACAGGAGTTCACCTGATTTCTCTAGTTTGTTTTACCCCTACACTGCTTTGAATCTGTTAGTTAAAATGCACTTCCTCTCTGCATATCTTTTATTCTCTATTTTTGTAACTGTGATTTCATTTGGAATGTTCACCTTACTTGGAGGGAATTTGACACCCGCAAGAGCTTTTACATCACTTTCTCTGTTTGCTGTGCTTCAGTTTCCTCTTTTCATGCTTCCTAATATTATAACTCAGAAGAGAGAATACTTTTTACCAAATCCACCGCTTGAGCCAGGATTACCAGCCATCTCAATCAAAAACGGAAACTTCTCCTGGGATTCCAAGGCAGAAAGGCCTACATTGGCAAACATAAACTTGGATATACCTGTTAGTAGCCTAGTTGCAGTTGTTGGAACTTGGAAGTACAGGAGAAGGGAAAACATCACTAGTATCTGCAATGCTTGGAGAACTTCCTGCAGTTGTAGGTTCAACTGTTGTTATGAGAGGGACAGTTGCTATGTACCCCAAGTCTCTTGGATTTTTAATGCAACTGTAAGTGCGGATAATGTTTTATTTGGTTCTGCCTTTGACCCAATAAGATATGAAAGGGCAATAGATGTGACTGAACTACGACATGACCTTGAGTTACTGCCTGGTGGTGATCTTACCAAAATTGGAGAAAGAGGTGTGAACATCAGTGGTGGTCAAAAGCAAAGAGTATCCATGGCTAGAGCTGTTTACTCCAAATCCGAGTGGATGTTTTCTATACACAAGATTGGTCATATTAACATATACATGTATGCTAGGCATGTGCCTCCAACAATAAAGAAAACGGAGAGAGAAAAAGACAACAATGCTGCTAAGGTTTTTGATAAATGCATCAAGGGAGAATTGAGAGGGAAGACCCGAGTTCTTGTTACAAATCAACTGCATTTCCTTTCACAGGTGGATGGAATCATTTTGATCCATGAAGGTACTGTGAAAGAGGAGGGAACATTTGAGGAGCTCTCTAACCAGGGGCCATTGTTCCAAAAGCTTATGGAAAATGCTGGAAAGATGGAGGAGTATGAAGAAGAAAAGGTAGATACTGAAACTGCTGATCCGAAGTCCTCTTCAAAACAGCTGGCCAATGGAGAACTTGATGATACTGCAGAGAGTGGTAGTAAGGCAAAAGAAGGAAAATCTGTCCTTATTAAACTGGAAGAACAGGAAACAGGTGTTGTCAGTATGAAAGTTTTAGCAAGATACAAGACTGCATTAGGAGTTCTTTGGGTGGTTGTAATACTCTTTGGATGCTATTTCTTAACAGAGGTGTTACGAATTTCAAGTAGCACATGGTTGAGCCATTGGACTGATCAGAGTGCTTCAGTGGGCTATGATCCTGGATTTTATAATCTGATATATGCAGCTCTATCATTTGCTCAGGTTATGGTGACTTTAACAAATTCTTATTGGTTGATCATTGGTTGA	1755	0.4063	ECKPWWEIGNDLSQFLGPLILNQLLESMQNGDPAWIGYVFGVLCEAQYFQNVMRVGFRLRSTLVATVFRKSLRLTHEARKQFASGKITNVMTTDAEALQAWYRSSPDFSSLFYPYTALNLLVKMHFLSAYLLFSIFVTVISFGMFTLLGGNLTPARAFTSLSLFAVLQFPLFMLPNIITQKREYFLPNPPLEPGLPAISIKNGNFSWDSKAERPTLANINLDIPVSSLVAVVGTWKYRRRENITSICNAWRTSCSCRFNCCYERDSCYVPQVSWIFNATVSADNVLFGSAFDPIRYERAIDVTELRHDLELLPGGDLTKIGERGVNISGGQKQRVSMARAVYSKSEWMFSIHKIGHINIYMYARHVPPTIKKTEREKDNNAAKVFDKCIKGELRGKTRVLVTNQLHFLSQVDGIILIHEGTVKEEGTFEELSNQGPLFQKLMENAGKMEEYEEEKVDTETADPKSSSKQLANGELDDTAESGSKAKEGKSVLIKLEEQETGVVSMKVLARYKTALGVLWVVVILFGCYFLTEVLRISSSTWLSHWTDQSASVGYDPGFYNLIYAALSFAQVMVTLTNSYWLIIG*	585

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo09g0952	584	ProSitePatterns	ABC transporters family signature.	327	341	IPR017871	GO:0005524
	Amo09g0952	584	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	379	443	IPR027417	-
	Amo09g0952	584	MobiDBLite	consensus disorder prediction	449	483	-	-
	Amo09g0952	584	Gene3D	ABC transporter type 1, transmembrane domain	5	184	IPR036640	GO:0005524\|GO:0016021
	Amo09g0952	584	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	38	182	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
	Amo09g0952	584	PANTHER	ABC TRANSPORTER C FAMILY MEMBER 11-RELATED	6	100	-	-
	Amo09g0952	584	PANTHER	ABC TRANSPORTER C FAMILY MEMBER 11-RELATED	127	583	-	-
	Amo09g0952	584	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY C	6	100	-	-
	Amo09g0952	584	Gene3D	-	374	469	IPR027417	-
	Amo09g0952	584	Gene3D	-	193	350	IPR027417	-
	Amo09g0952	584	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY C	127	583	-	-
	Amo09g0952	584	SUPERFAMILY	ABC transporter transmembrane region	10	339	IPR036640	GO:0005524\|GO:0016021
	Amo09g0952	584	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	200	444	IPR003439	GO:0005524
	Amo09g0952	584	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	195	347	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo09g0952	Amo-Chr9	19117778	19125937	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo09g0952	198	472	Calmodulin-binding Proteins	AT2G36910	21.034	1.90e-14	75.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo09g0952	-		-	gmx:100801762	573.548