Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0925 ATGGAGAGCGACACGCTTCTTCCTCACACCACCGTTTCTTGGACCGAACACAGCAATGACATTGGAATTTCCATGAATGCCCCTCTCACTTCCTTCAAATCCATACTCCAACCTCCTCCAATTACCATAAACCCCTTCCCGTTCCCACAACAACATACCGCACCCACTCTCACTACTACTGCTGATGATGACAACTTTCTCACACACCAAAACATGGACTCCTTCGCTCCGGAACACTCTTTCTTTACTCCCAAAGCCTCTTTCTTCAACAACAATCCTTTTGATAATGCCTTCGATTTGGGACCTGACGCCGGTTTCTTCTTCTCCGGGAACCATTCTTCTCAAACTGGCTCGCCTGACATCCCGCCGGCGACTCGGCTGCTCCCGGCGGGGGCCACCGACGATGATCCCGTGGCACTGGGTGCTGGATTTGGTGCCTCCGCTGCGTTTGAAATGGAGGCAGTTGGTGGTTCTGGAAACGCTCTGTTTTCGAGCAGGGGAAAGGGATTGGAAGCTTTGGTAGTGAGTAATTTGAAGAGGGTGCAGGAAGTTGAAGAAGCTAGCAATGAAGGTTCAATGTGGAATTCTGAAGAGGATGATGAGAGAACTGATGAGGTGGTGGTTGAGGAGAGTGGGAAGAAGAAGAAGAAGAAGGGGATGCCGTCCAAAAATCTTATGGCGGAGAGGCGGCGAAGGAAGAAGCTCAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAATATTAGCAAGATGGATAGAGTTTCGATACTTGGAGATGCAATTGACTACATGAAGGAGTTACAGCAGCGGGTCAATGATCTTCAAAATGAACTGGAGTCAACTCCAACTAGCTCTTCGCCATCATCTTCCACCAGCATTCAACCTTTGACACCCACACTGCAAACCCTTCCTTGCCGGGTGAAGGAAGAACTGTGTCCCGTGCCAATCCCAGGAAACCAAACAGCAAAGGTGGAAGTTAAGGTAAGGGACGGTAAAGCTATCAATATTCACATGTTTTGTAGCCGCCGACCAGGTCTTCTGGTCTCTACAATGCAGGCTCTGGATAACCTCGGATTAGATGTTCACCAAGCTGTTATTAGCTGCTTCAATGGTTTTGCTTTAGACATCTTCAAAGCTGAGCAATGCAGAGAAGGGCAGGATGTGCTTCCTGAGGAAATCAAAGCAGGTCTGCTGGATTCAGCAGGTATCCATGATATGATGTGA 1227 0.4857 MESDTLLPHTTVSWTEHSNDIGISMNAPLTSFKSILQPPPITINPFPFPQQHTAPTLTTTADDDNFLTHQNMDSFAPEHSFFTPKASFFNNNPFDNAFDLGPDAGFFFSGNHSSQTGSPDIPPATRLLPAGATDDDPVALGAGFGASAAFEMEAVGGSGNALFSSRGKGLEALVVSNLKRVQEVEEASNEGSMWNSEEDDERTDEVVVEESGKKKKKKGMPSKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRVSILGDAIDYMKELQQRVNDLQNELESTPTSSSPSSSTSIQPLTPTLQTLPCRVKEELCPVPIPGNQTAKVEVKVRDGKAINIHMFCSRRPGLLVSTMQALDNLGLDVHQAVISCFNGFALDIFKAEQCREGQDVLPEEIKAGLLDSAGIHDMM* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0925 408 MobiDBLite consensus disorder prediction 186 225 - -
Amo09g0925 408 Gene3D - 209 283 IPR036638 GO:0046983
Amo09g0925 408 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 219 268 IPR011598 GO:0046983
Amo09g0925 408 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 189 408 - -
Amo09g0925 408 PANTHER BHLH TRANSCRIPTIONAL FACTOR 189 408 - -
Amo09g0925 408 MobiDBLite consensus disorder prediction 206 225 - -
Amo09g0925 408 CDD bHLH_AtAMS_like 222 280 - -
Amo09g0925 408 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 222 286 IPR036638 GO:0046983
Amo09g0925 408 Pfam Helix-loop-helix DNA-binding domain 226 269 IPR011598 GO:0046983
Amo09g0925 408 MobiDBLite consensus disorder prediction 276 298 - -
Amo09g0925 408 Coils Coil 258 285 - -
Amo09g0925 408 SMART finulus 225 274 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0925 Amo-Chr9 18441918 18448909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0925 92 381 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 50.729 4.73e-94 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo09g0925 HLH 4.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0925 - - ahf:112779394 714.531