Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0903 ATGGAGGATTTTTACATCAAGTTGAGCAACAATAATAATAACAATTTCGAAGCTTGTTCTTCGGAGGAGGATGTTGTTGTAACCGCTTCTAAGTTGCATCTAACAGAAGCTACTACGAGCGTGGGCGTGGGTAGTAACTACCTCCTTCAACTTGCAGCACCCGACCCAGATATGTCGGATCCGGTTATTAAGGCTCAGATCGCCAACCATCCCCGCTATCCCGATTTGCTCTCTGCTTACATTCAATGTCAAAAGGTTGGAGCGCCGCCTGAAGTGGCCTCTCTGCTTGAAGAAATAAGCCGTGAAAGTCATCCAATGGATACTCGCCGCCGTCAGATTGGAGATGATCCTGAGCTTGATGATTTCATGGAATCATACTGTAATGTTCTTCATAAATACAAGGAGGAGCTGTCGAAGCCATTCAACGAAGCAACCTTGTTTTTGTGTAACATCGAATCACAACTCAGCAACCTTTGTAAGGGAACACTAACAATCTCTTTGGACACCAATAATAATCATCGATCCGATGAAGCAGCAGGGAGTTGTTCATCAGAGGTGGAAGGAATTGAATTTGGATATGGGACACGTGGCGTTGGAGATAAAGAGCTGAAGGAAATGTTGCTTCATAAGTACAGTGGTTACCTTAGTAGCTTGAGAAAGGAGTTTCTAAAGAAAAGGAAAAAGGGTAAGCTTCCTAAAGATGCAAGGATTGCTCTCATGGATTGGTGGAACTCCCACTATAGATGGCCTTATCCTACGGAGGAGGAGAAATTGATGTTATCAGAGATGACTGGATTGGACATAAAGCAGATAAACAATTGGTTCATAAATCAGAGGAAACGCCATTGGAAACCATCTTCAGAGATGCGATTTGGTGTCATGGAAGGTGTAAGTGGTGCTGCACATGGCACCATATTAGAACATATGTAA 930 0.4333 MEDFYIKLSNNNNNNFEACSSEEDVVVTASKLHLTEATTSVGVGSNYLLQLAAPDPDMSDPVIKAQIANHPRYPDLLSAYIQCQKVGAPPEVASLLEEISRESHPMDTRRRQIGDDPELDDFMESYCNVLHKYKEELSKPFNEATLFLCNIESQLSNLCKGTLTISLDTNNNHRSDEAAGSCSSEVEGIEFGYGTRGVGDKELKEMLLHKYSGYLSSLRKEFLKKRKKGKLPKDARIALMDWWNSHYRWPYPTEEEKLMLSEMTGLDIKQINNWFINQRKRHWKPSSEMRFGVMEGVSGAAHGTILEHM* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0903 309 CDD homeodomain 248 286 IPR001356 GO:0003677
Amo09g0903 309 Pfam KNOX1 domain 63 104 IPR005540 GO:0003677|GO:0005634
Amo09g0903 309 ProSiteProfiles ELK domain profile. 202 222 IPR005539 GO:0003677
Amo09g0903 309 SMART ELK_2 202 223 IPR005539 GO:0003677
Amo09g0903 309 Gene3D - 220 291 - -
Amo09g0903 309 SUPERFAMILY Homeodomain-like 224 294 IPR009057 -
Amo09g0903 309 Pfam Homeobox KN domain 242 281 IPR008422 GO:0003677|GO:0006355
Amo09g0903 309 SMART KNOX1_2 61 105 IPR005540 GO:0003677|GO:0005634
Amo09g0903 309 ProSitePatterns 'Homeobox' domain signature. 260 283 IPR017970 GO:0000981|GO:0006355
Amo09g0903 309 SMART KNOX2_2 109 160 IPR005541 GO:0003677|GO:0005634
Amo09g0903 309 ProSiteProfiles 'Homeobox' domain profile. 222 285 IPR001356 GO:0003677
Amo09g0903 309 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 12 296 - -
Amo09g0903 309 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 12 296 - -
Amo09g0903 309 Pfam KNOX2 domain 112 159 IPR005541 GO:0003677|GO:0005634
Amo09g0903 309 SMART HOX_1 224 289 IPR001356 GO:0003677
Amo09g0903 309 Pfam ELK domain 202 223 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0903 Amo-Chr9 17436985 17446039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0903 9 300 Homeobox Transcription Factor Family AT1G23380 48.173 6.26e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Amo09g0903 KNOX2 2.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0903 - - gmx:102660463 359.762