Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0842 ATGCCGGCAAGAAAGTTCTACTGTGATTACTGCGACAAGCAGTTTCCGGACACGGCGGCCGATCGGAAGCGACATGAGCGAGGTATTCAGCACCAACAAGCCAAAGCTCGCTGGTATGATTCCTTCAAACTTGAACAACAACAGCAGTTTCCTTCTAATGCACCACTACCCCAAGGCATGCCTCAACCTCTTTGCTATAACTTTGTCAACACTGGATTTTGTCGTTATGGTAACTCATGCAAATATCTTCATCCCAATGCCAACAACGCACCACACGCATCAATGATAAGTGCGCCTAATCCGTCAGGAAATGTAGTACTACAAGATAGGACAGGGTTGTCATGGGATAATTTGCCTCCATCACTGCAGCCTCCACCAGAAGCTGGATATCCCTCTCTTCCTTTTGTGGACTGGGGATAG 420 0.4762 MPARKFYCDYCDKQFPDTAADRKRHERGIQHQQAKARWYDSFKLEQQQQFPSNAPLPQGMPQPLCYNFVNTGFCRYGNSCKYLHPNANNAPHASMISAPNPSGNVVLQDRTGLSWDNLPPSLQPPPEAGYPSLPFVDWG* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0842 139 ProSiteProfiles Zinc finger C3H1-type profile. 59 87 IPR000571 GO:0046872
Amo09g0842 139 Gene3D Classic Zinc Finger 3 49 - -
Amo09g0842 139 PANTHER NUCLEASE-RELATED 1 139 - -
Amo09g0842 139 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 63 85 IPR000571 GO:0046872
Amo09g0842 139 SMART c3hfinal6 60 86 IPR000571 GO:0046872
Amo09g0842 139 Gene3D - 50 111 - -
Amo09g0842 139 MobiDBLite consensus disorder prediction 91 112 - -
Amo09g0842 139 SUPERFAMILY CCCH zinc finger 62 86 IPR036855 GO:0046872
Amo09g0842 139 Pfam U1 zinc finger 5 39 IPR013085 GO:0008270
Amo09g0842 139 SUPERFAMILY beta-beta-alpha zinc fingers 4 53 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0842 Amo-Chr9 15154425 15156274 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0842 56 90 C2H2 Transcription Factor Family AT5G18550 45.714 9.39e-06 42.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo09g0842 zf-U1 7.7e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0842 K13152 - gmx:100527203 175.252