Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0817 ATGAAAGTCAAGATATTACGTATCCTTCTCAAGATCCCATGGCATGCAGTTGCTTCCTGGACTTGGGATGCTCAAGATGAAACGTGTGGCATTTGTAGGATGGCCTTTGATGGATGCTGTCCTGACTGTAAACTTCCTGGCGACGACTGCCCACTGATGTGGGGAGCATGCAATCATGCATTTCATTTGCACTGTATTCTAAAATGGGTGAATTCTCAGACATCACAAGCTCATTGTCCCATGTGCCGAAGAGAATGGCAGTTTAAAGCGTGA 273 0.4579 MKVKILRILLKIPWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLMWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKA* 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0817 90 SUPERFAMILY RING/U-box 13 89 - -
Amo09g0817 90 ProSiteProfiles Zinc finger RING-type profile. 40 83 IPR001841 -
Amo09g0817 90 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 1 89 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Amo09g0817 90 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 13 90 - -
Amo09g0817 90 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 90 IPR013083 -
Amo09g0817 90 PANTHER RING BOX 13 90 - -
Amo09g0817 90 CDD RING-H2_APC11 26 88 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0817 Amo-Chr9 13951535 13953883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0817 40 83 C3H Transcription Factor Family AT1G72220 41.304 4.51e-07 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0817 K03358 - ath:AT3G05870 197.978
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1386 19 29579912 29583892 Amo09g0817 09 13951535 13953883 hybridization