Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0814 ATGCCTCTGTATGAGTTATACCGGCTTTCTAGAGAGAAGCTTGATGAAGAGATTAATGGCACACGTGCAACTGATCAGTCTCGATCTTCCTCGCCTGAGAAGGATTTTTTCGAGCTAATTTGGGAAAACGGCAACATTTTGACAACGCAGGGTCAGTCTAGTAGAGCTAAGAAGAGTCCACCTCGCCGGAGCTTACCATCTCACTGCTTGCCATCTCACAGTCCCAAGGGTAGAGACAGAGATGCAGGGTATGTTAACAATCCAAGGGTAGGGAAGTCTGGTGATTTAGACACCGGATTGAATGAAATTTCGATGTCAGTGCCGTCGACTGAAGTGGATTTGGGTCATGATGATGATGTCATACCTTGGTTGGATTATACAATGGATGGCTCTTTGCAGAATGAGTATGGTTCTAATTTCTTACATGAACTATCCGGGGTCACGGATCAAGACTTGCCCTCAAATCATTTTTCGCTTGTGGATAAAAGTAGTGGTAATCAGGTATTTAGGGACTCTCATAAGAATTCTGCAGAGCAAAGCAACTTTTCCAGTGTTTCTTCGACCGGCGTAGATGAGACAACTAGACCTAAAGCTAGCACGGTTGAATCATACCTGCCATCATCATTCATTTCAGTTAGACCAAGAGTATCGGATGTTACTGCGAACAATACCAGTAATGCAATGCTTCATCCACCAGTTACTGAGATTCCTTCTTCATCGAGTGATTTTTCGAGCTTAAAGATGCAGAAGCAAGATCAAGTTATTCCTAGCAATGGTTCATCTGTTATGAATTTCTCCCATTTCGCAAGGCCTGCCGCCATCGTGAGAGCTAATCTTCAGAACATTGGATTGAAGTCTGTTTCGTCTTCAACAAGATCTGAAAATGTGGAAAGTATGAATAAAGGTGCTGTTGTACCTAGCAGTAATCTTCCAGAATCAACTCTTGCCGATTCATGTAGTGAATGTCCAAAGGTTCTAATGGGGAACAATGAGAAGGCTGTGGAACAATCCAGGGATGATTTGAAACTGTTGGAGTCAAAATCTCTCGAACAGAACATTGCCGGTTCTAAACAATTAGACCCTACTTGCAAAGAGAAAGCCATTAAAATTGATCAAACTTCCAACCGAGTTCTTGGTGAAACTGCCACTAACACACAGATAGCTGCTGAAAGAAGTACGGAGCTGGTGGTAGCCTCTTCCTCTGTTGGCTCTGGCAACTGTGCAGACAGAGGTTCAGACGATCCAATTCAAAATTTGAAGCGGAAAAATCGAGACACTGAGGACTCTGAATGGCATAGTGATGATGTTGAGGAAGAATCAGTGGGTGTTAAAAAAGCAGCTGCTGGGCGTGGAGCTTCGGGTTCCAAGAGAAGTCGTGCTGCTGAAGTGCATAATCTTTCTGAAAGGAGGCGAAGAGATAGGATCAACGAGAAGATGCGTGCATTACAAGAACTCATACCCAATTGCAATAAGGTGGATAAAGCTTCAATGCTGGATGAGGCTATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCCGGTTTGTATATGCATCCGATGATGTTGCCACATGGAATGCAGCACATGCATGCACCACACTTGGCTCCTTTTTCGCCTATGGCCTATGGAATGCAAATGGGATTGGGTATGGGATATGGCATGGCTATGCCTGATATGAATGGTGTATCATCTCGATTCCCAATGGTTCAGGTTCCCCAAATGCAAGGAACTCATGTCCCTGTTGCACAAATGTCTGGACCTACTGCAATGGTTAGATCAAATACTCAAGGGTTCGGGGTTCCAGGTCAGGGATTTCCCTTGCCACTCCCTCGTGCACCCTTATTTCCTTTCTCGGGAGGGCCGGTTATGAACTCATCGTCGGCTTTGGGATTACGTCCTTGTGGAACAACAGGGCTTAGTCAAACTGCGGATCTGGCGTCAACATCTGGCTTAAAGGACCCTTCGCCAAATACGGATTCACTAGTTAAGCAAAGTACTGGTGGTGGCGGCTGCGACTCAACTAGTCAGATGCCTACCCAGTGTGAAGCAGCAGCAACAACTGTTGGATTTGAACAGTCATCAATGGTACATAATAGCAGCCATACCTCTGAGGCTAATGACAGTGGAACTCTTAATCCTGACAAAGAAGATAATAACCTGTGA 2181 0.4475 MPLYELYRLSREKLDEEINGTRATDQSRSSSPEKDFFELIWENGNILTTQGQSSRAKKSPPRRSLPSHCLPSHSPKGRDRDAGYVNNPRVGKSGDLDTGLNEISMSVPSTEVDLGHDDDVIPWLDYTMDGSLQNEYGSNFLHELSGVTDQDLPSNHFSLVDKSSGNQVFRDSHKNSAEQSNFSSVSSTGVDETTRPKASTVESYLPSSFISVRPRVSDVTANNTSNAMLHPPVTEIPSSSSDFSSLKMQKQDQVIPSNGSSVMNFSHFARPAAIVRANLQNIGLKSVSSSTRSENVESMNKGAVVPSSNLPESTLADSCSECPKVLMGNNEKAVEQSRDDLKLLESKSLEQNIAGSKQLDPTCKEKAIKIDQTSNRVLGETATNTQIAAERSTELVVASSSVGSGNCADRGSDDPIQNLKRKNRDTEDSEWHSDDVEEESVGVKKAAAGRGASGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMHPMMLPHGMQHMHAPHLAPFSPMAYGMQMGLGMGYGMAMPDMNGVSSRFPMVQVPQMQGTHVPVAQMSGPTAMVRSNTQGFGVPGQGFPLPLPRAPLFPFSGGPVMNSSSALGLRPCGTTGLSQTADLASTSGLKDPSPNTDSLVKQSTGGGGCDSTSQMPTQCEAAATTVGFEQSSMVHNSSHTSEANDSGTLNPDKEDNNL* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0814 726 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 459 508 IPR011598 GO:0046983
Amo09g0814 726 PANTHER TRANSCRIPTION FACTOR PIF3 1 675 - -
Amo09g0814 726 CDD bHLH_AtPIF_like 459 521 - -
Amo09g0814 726 Pfam Helix-loop-helix DNA-binding domain 463 509 IPR011598 GO:0046983
Amo09g0814 726 SMART finulus 465 514 IPR011598 GO:0046983
Amo09g0814 726 MobiDBLite consensus disorder prediction 223 242 - -
Amo09g0814 726 MobiDBLite consensus disorder prediction 400 467 - -
Amo09g0814 726 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 456 520 IPR036638 GO:0046983
Amo09g0814 726 MobiDBLite consensus disorder prediction 48 85 - -
Amo09g0814 726 PANTHER TRANSCRIPTION FACTOR PIF3 1 675 IPR044273 GO:0003700|GO:0006355
Amo09g0814 726 MobiDBLite consensus disorder prediction 168 198 - -
Amo09g0814 726 Gene3D - 454 517 IPR036638 GO:0046983
Amo09g0814 726 MobiDBLite consensus disorder prediction 414 444 - -
Amo09g0814 726 MobiDBLite consensus disorder prediction 646 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0814 Amo-Chr9 13887256 13893005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0814 1 605 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 35.152 2.13e-72 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo09g0814 HLH 8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0814 K12126 - gmx:100794974 864.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1383 19 29516115 29521855 Amo09g0814 09 13887256 13893005 hybridization