Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0796 ATGGGTATCAAGGGTTTAACGAAGCTTTTGGCGGACAATGCACCGAAAGCCATGAAGGAGAATAAATTCGAGAGCTACTTTGGACGCAAGATCGCCATTGACGCCAGCATGAGCATTTACCAGTTCCTTATTGTTGTGGGAAGAATTGGAACTGAAATGCTCACTAATGAAGCTGGTGAAGTTACTAGTCATTTGCAAGGCATGTTTACAAGGACTATCAGGCTTCTCGAAGCTGGGATGAAACCAGTATATGTTTTTGATGGGAAACCACCAGAGTTGAAGAAGCAAGAGCTGGCAAAACGTTTGACGAGGAGGGCTGATGCTACCGAGGATTTGTCTGAAGCCAAGGAGACAGCCAATAAGGAAGACATTGAAAAATTCAGCAAACGGACTGTGAAGGTGACAAAGCAGCATAATGAAGACTGCAAAAAGCTTTTAAGACTCATGGGAGTGCCCGTTGTTGAGGCACCTTCAGAAGCAGAGGCTCAGTGTGCTTCTCTTTGTAAAGCTGGAAAGGTTTATGCTGTAGCTTCAGAAGATATGGATTCTTTAACATTTGGAGCTCCCAAATTTCTTCGCCATTTAATGGATCCCAGCTCCAAAAAGATTCCAGTGATGGAATTTGACATTAGCAAGGTTTTGGAGGACCTACAATTGAGCATGGACCAATTTATTGACCTATGCATTCTTTCTGGGTGTGATTATTGTGAAAGCATCCGAGGTATTGGAGGAACAACAGCTTTGAAGCTAATACGTCAACATGGTTCTATTGAGATGATACTGGAGAATATAAACAAAGAAAGGTACCACATTCCAGATGATTGGCCATATCAGGAGGCCCGACGGCTTTTTAAAGAACCATTGGTCATAACTGAAGACGAGCAACTTAATTTGAAGTGGTCTGCTCCAGATGAAGAAGTAATAGCTAGTCTGTTACAAAATCCTTCCAAACAGACACAGATTCACATACTCAAATTAATTCTATCAAAATATATTGAGTTCTTTGGCAATGTAACCAGCTTTGATCATGTTGCCTTGCAGGGGTTAGTAACATTTCTGGTAAATGAGAATGGATTCAACATTGATAGGGTGACAAAGGCAATTGAAAAAATTAAAGCAGCAAAGAACAAGTCGTCACAAGGCCGATTGGAATCATTTTTTAAGCCTACAGCAAATCCATCTGTACCCATTAAACGGAAGGAAACACCACAAGCTAATGCTAAAGAGAGTAACAAAAAGACTAAAGCCACTGTTGCTAAGAAGAAGAAATAG 1272 0.4096 MGIKGLTKLLADNAPKAMKENKFESYFGRKIAIDASMSIYQFLIVVGRIGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPVYVFDGKPPELKKQELAKRLTRRADATEDLSEAKETANKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVVEAPSEAEAQCASLCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFDISKVLEDLQLSMDQFIDLCILSGCDYCESIRGIGGTTALKLIRQHGSIEMILENINKERYHIPDDWPYQEARRLFKEPLVITEDEQLNLKWSAPDEEVIASLLQNPSKQTQIHILKLILSKYIEFFGNVTSFDHVALQGLVTFLVNENGFNIDRVTKAIEKIKAAKNKSSQGRLESFFKPTANPSVPIKRKETPQANAKESNKKTKATVAKKKK* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0796 423 SMART xpgn3 1 108 IPR006085 GO:0004518
Amo09g0796 423 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Amo09g0796 423 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Amo09g0796 423 CDD H3TH_FEN1-Euk 222 290 - -
Amo09g0796 423 SMART xpgineu 147 219 IPR006086 GO:0004518
Amo09g0796 423 Hamap Flap endonuclease 1 [fen]. 1 388 IPR023426 GO:0016788
Amo09g0796 423 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Amo09g0796 423 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 395 IPR036279 -
Amo09g0796 423 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Amo09g0796 423 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Amo09g0796 423 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Amo09g0796 423 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Amo09g0796 423 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Amo09g0796 423 MobiDBLite consensus disorder prediction 377 423 - -
Amo09g0796 423 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518
Amo09g0796 423 Gene3D - 2 218 - -
Amo09g0796 423 CDD PIN_FEN1 4 373 - -
Amo09g0796 423 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 420 IPR006084 -
Amo09g0796 423 Gene3D - 219 286 - -
Amo09g0796 423 Coils Coil 105 125 - -
Amo09g0796 423 PANTHER FLAP ENDONUCLEASE 1 1 420 - -
Amo09g0796 423 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0796 Amo-Chr9 13431290 13437581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0796 1 402 Core DNA Replication Machinery Family AT5G26680 76.368 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0796 K04799 - gmx:100792878 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1368 19 28481920 28487367 Amo09g0796 09 13431290 13437581 hybridization