Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0782 ATGTCAGCCACTGCCACTTCAAAGCGGACAATTCTTTCTGATCTTATAACTGTCTATGCAAAGGGTGGAAAGACTATTGTTTTCACACAGACAAAAAGGGATGCCGATGAAGTATCACTGTCATTAACAAATAGTATAGCTTCTGAAGCTCTGCATGGTGATATATCTCAGCATCAAAGAGAAAGAACATTGAATGGCTTTCGGCAAGGGAAGTTCACTGTTCTTGTTGCCACGGATGTTGCAGCCCGTGGACTTGATATTCCCAATGTTGATTTGGTTATCCATTACGAACTTCCTAATGACCCTGAGACTTTTGTGCATCGCTCTGGTCGTACTGGGCGTGCTGGAAAAGAAGGTACTGCCATTCTGATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTTGGCTGTAAATTTGAATTTGTTAGTCCACCAGCTATCGGAGAGATTTTGGAGGCATCTGCTGCACAAGTTGTTGCTACGCTTGAGAGAGTTCATCCAGAGTCTGTTGAGTTCTTCACTGCAACTGCACAAAAATTGGTTGAAAAACAAGGGGTTAGTGCCCTCGCAGCTGCACTAGCACAGCTCAGTGGATTCTGTAGACCTCCATCATCCCGTTCATTAATCAACCATGAGCAGGGATGGGTTACATTGCAACTCACTCGAGATGGAGATAATTCTAGAAGATTTCTTTCTGCAAGATCGGTCACTGGGTTTCTTTCTGATGTGTATTCTCCTGCTGCTGATGAAGTTGGAAAAATACATGTAATTGCAGATGACCGGATTCAAGGAGCTGTTTTTGATCTTCCAGAGGACATTGCTAAAGAGTTACTCAACAAGGATTTGCCACCTGGAAACACTATTTCCAGGATCACCAAGTTACCTGCTTTGCAAGATGATGGACCTGCAAATGATTACTACGGGAAGTTTTCCGACAGAGAACGAAGTAACCGAAGAGGTTCAAGGGATCAGAGAAGTTTTAAAACCTCACGAGGATATGGGGGAAACCGAGGCTCTAACGATGATTTTGGTAGTTCATACGGGAGAGGGAGTAAAAGTTTTAAATCTGGCAACAGCCGGTCTCGAATGGGAAAAAGCAGTGATGACTGGCTGATTGGAGGTAGACAATCAAGCAGGGGTGGTAGCTATGGAGGGGCCTGTTTTAATTGCGGAGAATCGGGGCATCGGGCATCAGATTGTCCCAATAAGCGAAGCTTCTTTTAG 1239 0.4463 MSATATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLSLTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLERDVGCKFEFVSPPAIGEILEASAAQVVATLERVHPESVEFFTATAQKLVEKQGVSALAAALAQLSGFCRPPSSRSLINHEQGWVTLQLTRDGDNSRRFLSARSVTGFLSDVYSPAADEVGKIHVIADDRIQGAVFDLPEDIAKELLNKDLPPGNTISRITKLPALQDDGPANDYYGKFSDRERSNRRGSRDQRSFKTSRGYGGNRGSNDDFGSSYGRGSKSFKSGNSRSRMGKSSDDWLIGGRQSSRGGSYGGACFNCGESGHRASDCPNKRSFF* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0782 412 Pfam GUCT (NUC152) domain 204 303 IPR012562 GO:0003723|GO:0004386|GO:0005524
Amo09g0782 412 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 1 403 - -
Amo09g0782 412 SUPERFAMILY Retrovirus zinc finger-like domains 379 410 IPR036875 GO:0003676|GO:0008270
Amo09g0782 412 PANTHER - 1 403 - -
Amo09g0782 412 Pfam Helicase conserved C-terminal domain 8 116 IPR001650 -
Amo09g0782 412 ProSiteProfiles Zinc finger CCHC-type profile. 392 407 IPR001878 GO:0003676|GO:0008270
Amo09g0782 412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 150 IPR027417 -
Amo09g0782 412 CDD GUCT_Hera 210 290 - -
Amo09g0782 412 Gene3D - 379 410 - -
Amo09g0782 412 SMART c2hcfinal6 391 407 IPR001878 GO:0003676|GO:0008270
Amo09g0782 412 SMART helicmild6 36 116 IPR001650 -
Amo09g0782 412 Gene3D - 4 201 IPR027417 -
Amo09g0782 412 Pfam Zinc knuckle 391 407 IPR001878 GO:0003676|GO:0008270
Amo09g0782 412 MobiDBLite consensus disorder prediction 311 331 - -
Amo09g0782 412 CDD SF2_C_DEAD 8 125 - -
Amo09g0782 412 MobiDBLite consensus disorder prediction 332 370 - -
Amo09g0782 412 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 11 156 IPR001650 -
Amo09g0782 412 MobiDBLite consensus disorder prediction 296 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0782 Amo-Chr9 13066843 13070821 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0782 12 138 Eukaryotic Initiation Factors Gene Family AT3G19760 38.281 2.90e-23 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0782 - - gmx:100815040 650.973