Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0755 ATGAGAAGGCACTCTTGCTGTTACAATCAGAAGCTTCGAAAGGGTCTGTGGTCACCTGAGGAGGATGAGAAACTTCTCATGCATATTACTAAGTATGGTCATGGATGTTGGAGCTCTGTGCCTAAGCAAGCAGGTTTGCAAAGGTGTGGTAAGAGCTGCAGACTTAGGTGGATAAATTACTTAAGGCCTGATTTGAAGAGAGGTACATTCTCACAAGAAGAAGAGAATCTCATCATTGAGCTTCATGGAGTATTGGGCAATAGATGGTCGCAAATTGCGGCACAATTGCCAGGGAGGACCGACAATGAGATAAAGAATCTGTGGAATTCTTGCTTGAAGAAGAAGCTGAGGCAGAGAGGTATAGACCCTGTGACACACAAGAAGATTCCGGAGGCCGAGAACGGCAGCGAGGACAACGACAACAGAAACCAAGAAAAGACAGCAGAAGCATCGTCCAATGAGTTGAACAAATCAGATGATGCAACTCCCTATGTGCAAAACAGAGCATCTTCAATGAGTTGCCATCATCACTCAGATTTCATGGGTGGTTTTCCAATTCAGATGATAAATCATGCATCATCATCATCAGATTCAAATTCAGTTAATTGGTATAGCCACAGTAGTGGAAGGTCTTTTGATATCAACACTGATTTTCCATTCAATACCACTTCTATTCTTACACCAACAACCGCAACCAATTTATTTCTTCCTACTGATTCTAGTTTCCTTTACAAGCCTTCTTTCTCTTCTTCTTCCAACTCTCCTGAAAATATCTCTAATACTACACCCTATGGATTGAAAGAGGAACAATACCAAATTCACATGAGCATAGAAGAGTTAGAAGAATTATCATCCAAATGGGATGAGTATTATTACTACCTTCATAACCCAGTCTCAATGCCTGCTTCTTCTGAATCATTTTGCAATGAAATGAAGCCAGATATACACTATTTGATACCTGATACACCAGGTCCCATTATGTTACCTCACCATAATAATAATAATACCAAGTTCCAAGAACCATCTCAAATGGCTAGTTTCTTTTCAAAGGACATTCAGAAGCTCACAGCAGCATTTGGACATATATAA 1089 0.4022 MRRHSCCYNQKLRKGLWSPEEDEKLLMHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHGVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKKIPEAENGSEDNDNRNQEKTAEASSNELNKSDDATPYVQNRASSMSCHHHSDFMGGFPIQMINHASSSSDSNSVNWYSHSSGRSFDINTDFPFNTTSILTPTTATNLFLPTDSSFLYKPSFSSSSNSPENISNTTPYGLKEEQYQIHMSIEELEELSSKWDEYYYYLHNPVSMPASSESFCNEMKPDIHYLIPDTPGPIMLPHHNNNNTKFQEPSQMASFFSKDIQKLTAAFGHI* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0755 362 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo09g0755 362 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Amo09g0755 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo09g0755 362 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Amo09g0755 362 Gene3D - 69 154 - -
Amo09g0755 362 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo09g0755 362 CDD SANT 17 61 IPR001005 -
Amo09g0755 362 MobiDBLite consensus disorder prediction 122 147 - -
Amo09g0755 362 PANTHER MYB DOMAIN PROTEIN 55 1 262 - -
Amo09g0755 362 SMART sant 66 114 IPR001005 -
Amo09g0755 362 SMART sant 13 63 IPR001005 -
Amo09g0755 362 Gene3D - 14 66 - -
Amo09g0755 362 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo09g0755 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo09g0755 362 CDD SANT 69 109 IPR001005 -
Amo09g0755 362 PANTHER MYB DOMAIN PROTEIN 55 1 262 - -
Amo09g0755 362 MobiDBLite consensus disorder prediction 122 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0755 Amo-Chr9 12528758 12530294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0755 1 138 MYB Transcription Factor Family AT4G01680 89.130 2.64e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo09g0755 Myb_DNA-binding 5.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0755 K09422 - gmx:100782199 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1333 19 27103336 27105968 Amo09g0755 09 12528758 12530294 hybridization
Amo16g0977 16 15778066 15780058 Amo09g0755 09 12528758 12530294 PCT
Amo06g0060 06 627747 629385 Amo09g0755 09 12528758 12530294 PCT
Amo09g0755 09 12528758 12530294 Amo16g0977 16 15778066 15780058 PCT
Amo09g0755 09 12528758 12530294 Amo06g0060 06 627747 629385 PCT