Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0741 ATGGATGAAGAAGCCTATTCCTCTTCCTCTTCCTCTTCACCTATCAACCCTTCATTCTCAACTGCTTCTTCAAAAAGCGACAAATTCTATGTGAAAGTGTACATGGAAGGCAATCTAATTGGCAGAAAACTCAACCTTCTAGCTCATGATAGCTACCAAAGATTGGTTAAGGCTCTTGAACAAATGTTTGAAACTACCATATTTTTGAGAACTGAGTTAGATGCAGTACAAGCAGAGAGGTGCCATGTGCTAACTTATGAGGATGGAAAACGGGATTTGATTATGGTTGGGGATGTGTCTTGGGAGTAA 309 0.4013 MDEEAYSSSSSSSPINPSFSTASSKSDKFYVKVYMEGNLIGRKLNLLAHDSYQRLVKALEQMFETTIFLRTELDAVQAERCHVLTYEDGKRDLIMVGDVSWE* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0741 102 Gene3D - 22 102 - -
Amo09g0741 102 ProSiteProfiles PB1 domain profile. 28 102 IPR000270 GO:0005515
Amo09g0741 102 SUPERFAMILY CAD & PB1 domains 20 102 - -
Amo09g0741 102 PANTHER AUXIN-INDUCED PROTEIN 22 102 - -
Amo09g0741 102 MobiDBLite consensus disorder prediction 1 23 - -
Amo09g0741 102 Pfam AUX/IAA family 18 102 IPR033389 -
Amo09g0741 102 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 22 102 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0741 Amo-Chr9 12255840 12256242 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0741 22 101 B3 DNA Binding Superfamily AT1G59750 31.250 1.67e-08 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo09g0741 AUX_IAA 1.9e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0741 K14484 - gmx:100781660 120.938