Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0740 ATGGGTAAAAGAGGGTCTTCCTGTTCCTCTTCCTCTTCATCTTTCTCAACTGCTTCTTCACATCTTCATGATGATCTTAGTCTTGGACTCAGCATTTCTTCCACTCATCATCAACATCTTCCTTCCTCTATCTCAAGGGGGCAGTGGCAAATCCAATCATCATCACTTGCAAGTAGTTCACAAGGTGCTGAATTGGCAAATGATTGTAGTGATCATAACACGTTCTTTGTCAAAGTGTACATGGAAGGCATTCCAATTGGCAGAAAACTCAACCTTTTAGTTCATGATGGCTACCATGAATTGGTTAAAGCTCTTGAACAAATGTTTGACACTACCATACTCTGGGGAACTGAGTTAGATGCAGTGCAAGCAGAGAGGTGTCATGTTCTAACTTATGAGGATGGAGAAGGGGACTTGATTATGGTTGGAGATGTGCCTTGGGAGATGTTCTTATCAGCTGTAAAGAGGTTGAAGATCACCAGGGTTGACACATTTGGATGTTGA 504 0.4206 MGKRGSSCSSSSSSFSTASSHLHDDLSLGLSISSTHHQHLPSSISRGQWQIQSSSLASSSQGAELANDCSDHNTFFVKVYMEGIPIGRKLNLLVHDGYHELVKALEQMFDTTILWGTELDAVQAERCHVLTYEDGEGDLIMVGDVPWEMFLSAVKRLKITRVDTFGC* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0740 167 Pfam AUX/IAA family 59 161 IPR033389 -
Amo09g0740 167 PANTHER AUXIN-INDUCED PROTEIN 6 166 - -
Amo09g0740 167 Gene3D - 68 166 - -
Amo09g0740 167 SUPERFAMILY CAD & PB1 domains 71 159 - -
Amo09g0740 167 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 166 IPR003311 GO:0005634|GO:0006355
Amo09g0740 167 ProSiteProfiles PB1 domain profile. 74 164 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0740 Amo-Chr9 12242430 12244279 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0740 78 159 B3 DNA Binding Superfamily AT4G23980 35.366 8.83e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo09g0740 AUX_IAA 7.1e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0740 K14484 - gmx:100784866 226.483