Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0713 ATGTTAAGGATCATTATTTATACAGAATTAATTATCATCACTGTGGGGCATCAAAATGATATTCCAGGTCATGCAGCATTGGACTTTGAAAGGGTGGTGAGAGAACATGTGTATATACTAATGATATTTTGTCAAGTGATGGAAAAAATGGAGCCTTTGATGTTTTCTTGGGGGAAAACAATTCTATTTTCGCCAAATAGTGTGTTGGAACATGAAATCCCCGTTTACAAGGCTGTTCAAAAGCTAGGGGAGTTTGTGATTACCTTCGCTAAGGCAGACCATGTTGGATTCAGTCATAATTAA 303 0.3696 MLRIIIYTELIIITVGHQNDIPGHAALDFERVVREHVYILMIFCQVMEKMEPLMFSWGKTILFSPNSVLEHEIPVYKAVQKLGEFVITFAKADHVGFSHN* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0713 100 Gene3D Cupin 20 100 - -
Amo09g0713 100 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 21 99 - -
Amo09g0713 100 Pfam JmjC domain, hydroxylase 21 99 IPR003347 -
Amo09g0713 100 PANTHER LYSINE-SPECIFIC DEMETHYLASE 21 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0713 Amo-Chr9 11655453 11655857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0713 21 99 C2H2 Transcription Factor Family AT5G04240 39.241 7.68e-12 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Amo09g0713 JmjC 2.5e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0713 - - gsj:114408462 95.9005