Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0686 ATGGCTTCAGTTTACCGCAATTCGAGCTCAGGATCGGAGGGCGGAGAGCCCGTGATGGACGAGAGGAAGAGGAAGAGGATGCTGTCGAACCGCGAATCGGCGCGGCGGTCGCGGATGAGGAAGCAAAAGCAGCTGGAGGATCTGACGGAGGAGGTGAAGCGGCTTGAGGCCTCAAACAAGCAGTTGATTGAGGCCATTAAGATGAAGGAGGAATCTTATGCAGAGATTGAATCCTCAAACGGCGTCATCAGGGCTCAGATCACGGAGCTTGGGGACAGGCTTAAGTTCCTCAATTCCATCCTCGAAATTGCTGAAGTCGTAAGCGGCGGTGAGCTCTCCGTTGATTTACCGGAGATTCTGGATCCTCTCATGAAGCCTTGGCAGATTCCTTACCCATTTCAGCCAATCATGGCTTCGGCAGACATGTTCCTGCATTGA 438 0.532 MASVYRNSSSGSEGGEPVMDERKRKRMLSNRESARRSRMRKQKQLEDLTEEVKRLEASNKQLIEAIKMKEESYAEIESSNGVIRAQITELGDRLKFLNSILEIAEVVSGGELSVDLPEILDPLMKPWQIPYPFQPIMASADMFLH* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0686 145 Coils Coil 31 72 - -
Amo09g0686 145 MobiDBLite consensus disorder prediction 16 47 - -
Amo09g0686 145 PANTHER BZIP TRANSCRIPTION FACTOR 53 1 143 - -
Amo09g0686 145 CDD bZIP_plant_GBF1 23 74 IPR045314 GO:0003700|GO:0006355
Amo09g0686 145 MobiDBLite consensus disorder prediction 1 47 - -
Amo09g0686 145 SMART brlzneu 18 82 IPR004827 GO:0003700|GO:0006355
Amo09g0686 145 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 20 78 IPR004827 GO:0003700|GO:0006355
Amo09g0686 145 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 143 - -
Amo09g0686 145 Pfam bZIP transcription factor 22 79 IPR004827 GO:0003700|GO:0006355
Amo09g0686 145 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 25 40 IPR004827 GO:0003700|GO:0006355
Amo09g0686 145 SUPERFAMILY Leucine zipper domain 22 73 IPR046347 GO:0003700|GO:0006355
Amo09g0686 145 Gene3D - 20 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0686 Amo-Chr9 11171545 11172833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0686 18 143 bZIP Transcription Factor Family AT3G62420 58.730 3.79e-46 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo09g0686 bZIP_1 9.5e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0686 K25786 - gmx:780550 191.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1232 19 24777754 24779211 Amo09g0686 09 11171545 11172833 hybridization
Amo16g0549 16 8929959 8931664 Amo09g0686 09 11171545 11172833 PCT
Amo09g0686 09 11171545 11172833 Amo16g0549 16 8929959 8931664 PCT