Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0684 ATGAGAATACTTGGTTCCTTGAACCAAGAATACAACTTTACCATACATATATTCTCCTGGCTTGGAGCAGACCCCGGAAGTTTATTTCAGAGGCTTACCAGCGTGAAGCGTGATAGAAGTTTGAAGGAGAATGCTACCAGAGGTGTCATGGGAAAAATCCTGCTTGAAGTTCCTGGATTATTGGTATTGCATGATGGACACACGCCACAAAATCAGAGTAGTCAGATTTGGAAAGTTCTTTCTGAGATTCAAAATCACAAAAGAATCATCCTTTTTGGGACTCCTTTCCAAAATAATTATCTGGAGCTTTACAATACAATCTGCATGGTCAGACCGTCCTTTTCAGATACCAGACCTCCTGAGCTTAAAAAGTTCTACCAAAGAAGATTGATGCAAGAGATGAAAGAATCTAAATGTTTCAGTTGGGAACTAGTTTCTTCATTCAAAACTGGGAATCTAAATGATGAGAACATCAAGCAGTTGAAGCAGCTGATGGATCCATTTTGGCATGTTCACAAAGGCAATATTCTTCAAAAGAATTTTCCTGGCTTGAAAGATTGTGGGTGA 567 0.3915 MRILGSLNQEYNFTIHIFSWLGADPGSLFQRLTSVKRDRSLKENATRGVMGKILLEVPGLLVLHDGHTPQNQSSQIWKVLSEIQNHKRIILFGTPFQNNYLELYNTICMVRPSFSDTRPPELKKFYQRRLMQEMKESKCFSWELVSSFKTGNLNDENIKQLKQLMDPFWHVHKGNILQKNFPGLKDCG* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0684 188 Pfam SNF2-related domain 61 182 IPR000330 GO:0005524|GO:0140658
Amo09g0684 188 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 27 187 IPR044567 GO:0080188
Amo09g0684 188 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 168 IPR027417 -
Amo09g0684 188 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 27 187 - -
Amo09g0684 188 Gene3D - 35 178 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0684 Amo-Chr9 11157235 11157831 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo09g0684 SNF2_N 7.9e-10 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0684 K10875 - lja:Lj1g3v3608470.1 198.364