Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0676 GTATATGGCTCGTTGTTAGTTCTTGGCTCATTGATGACATATTGGTACATTATAATCTCACAAAAGGAGGAACATGACACTTTTTCAATATCAAAATTATTTTTAAACCAGCTTCAATCAGAAATTAGATACTCACTCGGACACATGGAGTCATCCTCAACTAATTTTTCAAGATTTTTCAGCTCTTCCCTCAATGCTTCTTCTAGTATCTCCTTCATGGATATTAAAACTAAGGTGGCTCCGTTATTATTTCAAGCATTTGAGAGGGTTCCTCACTTAGAGCAAATTTTATACATAGTCATGCAAGGTCTCTCATTTTCATATTATAGAGATCATCTTCAAATTTTGGCAATGTTCTCCAACTCATCATCTTCATCTACTCTATATTATATCCAACATGTAGATCAAGATAATGGAGAACCCTATGGTGAACCTACAAAATACAATTTTTCGTCTATTAACACAAGTTGGATTTCTGAAGCTCTTCAATTTTCTTATTCATATGCATTCAGCAATGCCTCATCATTGCGAACCAATTGGAGCATTATTGTTGATAATGGCCACAACCCTTTGTTTCTCAACTCCGCAAGAGTCACAAGAACAAGTGTGATCTCTCTAGGGTTCTCGGAAACAACAATAACTGATTTTCTCAGGGCTCAAAACAATGATCTTCATCAAAGTTCAATGAGCATGTCTTGGGCTACAAAAGATGGAAGGGCTATTGTACAAGGGATCCGAAATACTCGTTTGGTGATTTCTAATGATACAGTTTTGCTTCAATTATTGGACCAAAATGGAAACCCTAAAGGTGTTGGAGACACTGCTATACCATGCAACAATGAAAGATTTGGATCTAGTTTGAATATTCAGAATACGGAATATTTGATCCACTGCAGCACAATTGATATCATGGGAATAGAATCGGTATATGTTGTGGCTATTCGAAAGAATGAATTACTTAGCTTTGACCAGCATTATAAGAAAAAAGGGTTGACTCTGTTGATTGTAATGATATTCATGATATTGATTGCTCTCGTGAGCTTTCTAAGCATGAATGCAAGAAATGCAAAGAGAGAAATGAGATTGCGTGCCTCACTCTTGAAACAAATGGAAGGCACCCAACAAGCTGAGAGAAAGAACATGAATAAAAGCCTTGCATTTGCTGCTGCCAATCATGATGTTAGGGCTTCTCTTGCGGGCCTTACTGCTTTGATAGACATGTCCTTTGACTTTGTTCAAAATGCGTCTGAATTGGACACCAACTTAAAACTAATGAAGGGTTGCACCCAAGACTTACTAGGGCTGCTGAATTCTATACTTGACACAAGCAAAATTGAGGCTGGAAAAATACAGCTTGAGGAAGAGGAATTTGATGTATCAATTCTGTTGGAAGATATAGTTGACTTATACCACCCTATGGCCTCAAAGAAAGGTGTGGATCTAATCTTGGACCCTTGTGATGGTTCTATTATTAGATACTCACGTGTCAAAGGAGACAGAGGAAGACTCAAACAAGTTTTGTGTAATCTTTTGAGCAATGCTGTTAAGTTTACTGATGAGGGGCACATAGTGGTTAGGGCAAGAGCTCAAAAGCCAAGCTTGCACAATTCATTAATGGCTGGTAATAGTGAAAAACATGGATTCACGGGACGTTTATCATGCTTATGTTTCAAGAAAATTAGCAGTGATGAAATTGAAGGCACGAGTAATTCAACACACGCAGATCCATATTGCGTTATGGATTTTATATTTGAAGTGGATGATACGGGAAAAGGAATCCCCAAAGAGAAGTACGAGTCTGTGTTTGAGAACTATATCCAAGTCAAAGAAACTTCCCTTGGAGTTGGAGGAACTGGCTTGGGACTTGGGATTGTGCAATCACTGGTGCGTTTGATGCATGGAGACATTGAAATTTCAGAGAAGGACGTGGGAGAAAAGGGAACATGCTTCAAGTTCAATGTTATCCTTAATGTATACGAGACAATCACGAATGCTGCTAGCACAAAAGAAGAAGAAGGTGTTGATGAAAGAAACCACACTCAGGCACCATTACCAACCCTTCAAAGTTGTAGCTCTGGTTCAAGCATTTGTTCCCTTAGTCCAAGATTCCGAATCCGCAGCTCCAGTCCCAAGCCAGAGCCTTCTCGTGTCATTATGCTAATCGCCGACGAGTATCGGCGGAAGGCCACAGAGAAGTTCATGGAGGGCTTAGGGATCAAAGTTGCCGCCGCGAAACGGTTGGAGGATCTATTTGATGTCTTGAAGAAGATGAAACAAAAGTGTCTGTATTCAAGCAGCCACAGTAGTGATTCTCAAGGATCAGAGTATTTGAGTGCGAGCTCTCACTCCCGTTCCAGCAGAGTTAGAGTTGCATTGAGTTCTATGGATGGAAAGACGGATATTGGAGCAGCATCTGATGGCTTTATCCTTATTGTGGTTGAGACAGATGCAGGGCCACTTCTGGAGCTGTGTAAGATAGTTTCCAACTTCAAAAGAGGGCTTTGTAACCCTTGTCAAGTTGTTTGGTTAGATAAGAAGATTCTCTTTAAGAATCTTGATAAGGACACGCTTGATCCCAAAGACATGGTTCTATCGAAACCGTTTCACGGTAGCCGTTTGTTCCAGGTTATAAAGCTTCTTCCCGAGTTCGGTGGATCCAAATTGAACACTCAGGAATCCTTTGTGGATCAATCTTCTGTAATACAAGAATGTGAGGATACAGAAAAGCCGTTGAGTGGTAAGAAAATTTTGGTGGTTGATGATACTCCATTGATGCGCATGATTGCTTTGCGTACTTTGATCAAGCTTGGAGCGATTATAGAGCAGTGTGAGAATGGAGAAACAGCTGTGCATCTAGTTGGTGATGGTTTAATCAAGGATTTTCCTAATCCCCCTTACGATTACATCTTAATGGATTGCCAGATGCCAGTAATGGACGGGTTCGAGGCAACAAGGAAAATAAGAAAGATAGAGAAGAGGTATGGTAATATTCGCATTCCTATAATTGCATTAACAGCTGACAGTGACAAAATGACCATAGATGCTGGAATGGACTTTCACTTGGTAAAGCCTATCGACAGAAACAAATTTCTTGAAGCCATTCGAGACATCAATGCTAAAAAGCGCTCCATTTAA 3135 0.3994 VYGSLLVLGSLMTYWYIIISQKEEHDTFSISKLFLNQLQSEIRYSLGHMESSSTNFSRFFSSSLNASSSISFMDIKTKVAPLLFQAFERVPHLEQILYIVMQGLSFSYYRDHLQILAMFSNSSSSSTLYYIQHVDQDNGEPYGEPTKYNFSSINTSWISEALQFSYSYAFSNASSLRTNWSIIVDNGHNPLFLNSARVTRTSVISLGFSETTITDFLRAQNNDLHQSSMSMSWATKDGRAIVQGIRNTRLVISNDTVLLQLLDQNGNPKGVGDTAIPCNNERFGSSLNIQNTEYLIHCSTIDIMGIESVYVVAIRKNELLSFDQHYKKKGLTLLIVMIFMILIALVSFLSMNARNAKREMRLRASLLKQMEGTQQAERKNMNKSLAFAAANHDVRASLAGLTALIDMSFDFVQNASELDTNLKLMKGCTQDLLGLLNSILDTSKIEAGKIQLEEEEFDVSILLEDIVDLYHPMASKKGVDLILDPCDGSIIRYSRVKGDRGRLKQVLCNLLSNAVKFTDEGHIVVRARAQKPSLHNSLMAGNSEKHGFTGRLSCLCFKKISSDEIEGTSNSTHADPYCVMDFIFEVDDTGKGIPKEKYESVFENYIQVKETSLGVGGTGLGLGIVQSLVRLMHGDIEISEKDVGEKGTCFKFNVILNVYETITNAASTKEEEGVDERNHTQAPLPTLQSCSSGSSICSLSPRFRIRSSSPKPEPSRVIMLIADEYRRKATEKFMEGLGIKVAAAKRLEDLFDVLKKMKQKCLYSSSHSSDSQGSEYLSASSHSRSSRVRVALSSMDGKTDIGAASDGFILIVVETDAGPLLELCKIVSNFKRGLCNPCQVVWLDKKILFKNLDKDTLDPKDMVLSKPFHGSRLFQVIKLLPEFGGSKLNTQESFVDQSSVIQECEDTEKPLSGKKILVVDDTPLMRMIALRTLIKLGAIIEQCENGETAVHLVGDGLIKDFPNPPYDYILMDCQMPVMDGFEATRKIRKIEKRYGNIRIPIIALTADSDKMTIDAGMDFHLVKPIDRNKFLEAIRDINAKKRSI* 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0676 1044 CDD REC_hyHK_CKI1_RcsC-like 916 1034 - -
Amo09g0676 1044 MobiDBLite consensus disorder prediction 668 687 - -
Amo09g0676 1044 PRINTS Bacterial sensor protein C-terminal signature 582 596 IPR004358 GO:0016310|GO:0016772
Amo09g0676 1044 PRINTS Bacterial sensor protein C-terminal signature 616 634 IPR004358 GO:0016310|GO:0016772
Amo09g0676 1044 PRINTS Bacterial sensor protein C-terminal signature 600 610 IPR004358 GO:0016310|GO:0016772
Amo09g0676 1044 ProSiteProfiles Response regulatory domain profile. 915 1038 IPR001789 GO:0000160
Amo09g0676 1044 PANTHER TWO-COMPONENT HISTIDINE KINASE 46 893 - -
Amo09g0676 1044 PANTHER TWO-COMPONENT HISTIDINE KINASE 901 1036 - -
Amo09g0676 1044 SMART REC_2 914 1034 IPR001789 GO:0000160
Amo09g0676 1044 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 498 654 IPR003594 -
Amo09g0676 1044 PANTHER HISTIDINE KINASE CKI1-LIKE 46 893 - -
Amo09g0676 1044 PANTHER HISTIDINE KINASE CKI1-LIKE 901 1036 - -
Amo09g0676 1044 SUPERFAMILY CheY-like 910 1037 IPR011006 -
Amo09g0676 1044 SMART HKATPase_4 498 658 IPR003594 -
Amo09g0676 1044 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 373 449 IPR036097 GO:0000155|GO:0007165
Amo09g0676 1044 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 437 653 IPR036890 -
Amo09g0676 1044 Pfam Response regulator receiver domain 916 1035 IPR001789 GO:0000160
Amo09g0676 1044 Gene3D - 450 662 IPR036890 -
Amo09g0676 1044 Gene3D - 366 449 - -
Amo09g0676 1044 Gene3D - 894 1043 - -
Amo09g0676 1044 ProSiteProfiles Histidine kinase domain profile. 389 658 IPR005467 -
Amo09g0676 1044 SMART HisKA_10 382 448 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0676 Amo-Chr9 11017005 11022914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0676 38 1041 Histidine Kinase Gene Family AT2G47430 37.909 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo09g0676 HATPase_c 3.2e-24 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0676 - - ahf:112708949 1845.48