Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0664 ATGCTGGGAACTAGTGATCAATCAGAAGTCTTTTGTGGTGTTCACTTCGTTCTTTTTGGTTTCAGTCCCGAGGATGAAACCGAGGTTCGGTTCAAGCTTGTGAACGGTGGTGCAGTGGATGAAGGCAAGTACAATGGAAGTTGCACGCACGTCATTGTCGATAAGATCATATATGATGATCCTGTGTGTATTGCTGCCAGAAACGATGGAAAGACAGTGGTGACTAAATTATGGGTTGATCATAGCTCTGATATTGCAATGCCCGTCGATGCTTCCTCCGTTATGTACAGACCTCTTAAAGATTTAAATGGAATACCTGGTGCCCAGAATTTGGTTGTGTGCTTGACTGGTTATCTACGACAGGATCGTGATGATATTATGACAATGGTTGACCTCATTGGTGCAACATTTCTTAAGCCCTTGGTGGCAAACAGGGTTACTCATCTTGTATGCTACAAATTTGAAGGGGAGAAGTATGAGCTTGCCAAGAGAATGGGAACAATAAAGCTAGTTAATCATCGTTGGTTGGAAGATTGCTTGAAATTCTGGGCGCTTCTTCCAGAAGAAAATTACAACAAGAGTGGCTATGAACTAGAGATTATGAAGTTAGAAGCTAAGGATTCTGATGAAGAAACTGAAGATTTTGATCTGGGGCAATCTGAGAGAAATATAAGCAGAAGTCCCCTCACTGCAAAATTTGGTGTTGAGGCAACTAGTGGCTTATTAAAATCAGATCGAGAGCTTTCAAGTGCCCAGCCAGAATCTACTAGTCTCAAGAATTCACCAAAAGTTGATAATAGTAAAGAATCTTCAGTTATTCAAGGTAATAACAACGGAGCTGATAGAGACATAAGCTTTAGTAATGTTGATGAGTCTAAGGCAATGGATAAGTTTCTTGATGTTGCTATAGGTGCTACATCATGTCAGATACCTGAGACAGATGTTAAGATCAGGGAGTCAAAGAAGGCCAATTCTCCAAAGACAGGCTGCCAGGATGTTCTCATAACTGAAAAAGCAGAACCACATGCTGAAACTTTTAATAAGCTGGCCAATGATTTCGGATCACCATCTACTGCAAGTGCTGAAAGGGTCACACGTTCTGAAGCAAAGCTCAGTTCTATCAAGTATTATTCTAAGAACAAAAGGGGATTCACTCTTCCAAGGAGCTTAAATGATGGTTTGGATAATGGAGCTGGATCTACTGTGTCACCTTTGGCTGATTTGAAATCGGGAAACAAACATAAAACCCCGTCCAATATGGTATTAAATGGCAGTGGGGGAATCAAATCAACCAGTGCTAAARATTCTGGGGATGTGACAATTGGTAAATTGCCGCAAAARAGGGTAAAYGAAGCTGCTTCTAATACATTAAAATCAAGGAAACTTACTTCCGATGCAAACTTATTTGTCGAGAAAACCACTTCAGAAAATGGTAAATCTGAAGCACGAAAAGTGACATCTATGGTTGAGGAACCATCCAAGTCTGAACCCTGTTTTTCTGCTGGAAAAGATAGTTTTGACAAACCCAACAAAAACTCATTTTCTAAATCCATAGCTTCTATATCCAATTCCCTATCATTTGATGAGCCTTTTACAAGAGATATAAGCCCAAAGTCAGCTCGAAGTGATAAAGCCTATCAGACTGAGTCTAAAATTAATGGGAAGCATGAAATTGCGGGTCATGGAATGGAACAAGTTGCTGGTAATGAAGTTGAGAAACACAAAGTTGCAAAAAATCTGGAGGGGTCCCCTGACAATAAGAACCCTCTGAATGGGGAATCCCCAAATTTAGATTTAGGCAATGAAGAAAGTACTAAGCTGATTAAAAGATCACCCCGCAAGAAATCAGTTGCCAAGAGAAGTTTTGGCTCTAAGCCAAAAGTTGGTGCTACTGCTAAACAGAAAACACTAGTTTCCTCAAACAGGACCATCCAGCAAGGTGAAGCTGTAAACTTTTCCAGTCGAATCAAAGAGGTACCAATTGACAATGGCGATAAACCTCAACCTATGACTGATGATAATAATAAGTCAGAGGAGCAAGAAACTGTTGTTAAACATGCAGAAGATGCCAATGGCAGACTTGAAACTATGGATGATGAAACAGAGGCTCCTGATGATAAATGTGAATTTGAGCTGGGAATGAAACACGATGAAAATAAAAACAAAGCTGATGAAACAGCAGAAAAGTCAGAAGACATTCACCATGTAACAGAATGTGAAGCAGCAGTGCCTGAGAAGGAAACTGCAGAGTTAACTGAAAAAGAGAAGGCACCTTCAGTAGATGACTCAACCATGAAACGCGAAGTAAAACATCAAGTGAAAAAGCGTCCTCTAAGTATTGCCAAGAAGGCCACTGTTGCAAAGGGACTACAGAAATCTAAAGTGGCACTGTCTGAGAATAAGATAAGCATGGAACGGGAAAATGTGGCACGAATGAAATCTGCAGAAGAAGTATCTCATGCTACAGATGCGAGCAACAAATCCTTCGCACCAAGAAAGCCATTTGGAAATTCAGAAGAACAGAAGGAAAATAGACCAATTGATGAGGGAGAGCAGGATATGCCTGAGGCCAAATCTGTTGCCAATCGAACTAATAAATTGAGTTCAAAGCCAGAAAAAATAAACCCCAAGCAAACAGGTTATAATCCACCTATGTCAGAAGCTAACAAAAGATTGAAAACTGAACCACCATGTTTCATATTAACGGGGCATCACTTTCTGAGAAAGGATTTCCAACAATTGATAAAGAAGTTAAAGGGCAAAGTTTGCCGGGATTCTCATCAGTGGTCATATCAAGCAACCCACTTCATAGCACCAGAGCCTCTACGCAGGATAGAGAAATTTTTTGCTGCTGCGGCATCAGGAAGGTGGATTCTGAAAACTGATTTCTTAACTGCTAGCAATCAGGCAGGGGAATTTGTGGAAGAGGAACCTTATGAGTGGCACGATATTGGTCTCAACGAGGATGGCACGATCGATATGGAGGCTCCTAGAAAGTGGCGGCTGCTGAAAGAGCGAACAGGTCATGGTGCCTTCTATGGAATGCGCATTATTGTGTATGGTGACTGCATCACTCCACCTTTGGATACTCTGAAGCGAGTGGTCAAAGCTGGAGACGGAACAATACTAGCTACCTCTCCTCCTTACACGCGCTTCCTTGGTACCGGAATCGACTATGCCATAGTTACTCCTGGAATGCCACGTGTCGACCTGTGGGTACAAGAGTTCTTAAGATACGAGATACCTTGCATTTCGGCTGACTACTTAGTCGAATATGTATGCAAACCAAGTTCCTCACTTGAGAAACATGTATTATATGACACTCATGTTTGGGCAGAAAGGTCATTTTCCAAACACCAGAATAGAGCAGAAGAGACCACTGATATTGAAGAATCAATTAGTAGCACTCCTGAAAGCAACGATATAGCTTGTGAAGTTTGTGGATCAAGGGATAGAGGGGATGTGATGCTGATTTGTGGTGATGAGAGTGGTTCTGTTGGTTGTGGAGTTGGTACACATATTGATTGTTGTGATCCTCCACTTATGGATGTTCCTGAGGAGGATTGGTTTTGCTCTAAATGCATTGTTAAACGAAACTGCTCAAACTCTCCCAAGAAAAGGAAAAAGGGTGGCTTCTCCAAGAGTAAGAGAAAATGA 3657 0.4132 MLGTSDQSEVFCGVHFVLFGFSPEDETEVRFKLVNGGAVDEGKYNGSCTHVIVDKIIYDDPVCIAARNDGKTVVTKLWVDHSSDIAMPVDASSVMYRPLKDLNGIPGAQNLVVCLTGYLRQDRDDIMTMVDLIGATFLKPLVANRVTHLVCYKFEGEKYELAKRMGTIKLVNHRWLEDCLKFWALLPEENYNKSGYELEIMKLEAKDSDEETEDFDLGQSERNISRSPLTAKFGVEATSGLLKSDRELSSAQPESTSLKNSPKVDNSKESSVIQGNNNGADRDISFSNVDESKAMDKFLDVAIGATSCQIPETDVKIRESKKANSPKTGCQDVLITEKAEPHAETFNKLANDFGSPSTASAERVTRSEAKLSSIKYYSKNKRGFTLPRSLNDGLDNGAGSTVSPLADLKSGNKHKTPSNMVLNGSGGIKSTSAKXSGDVTIGKLPQKRVNEAASNTLKSRKLTSDANLFVEKTTSENGKSEARKVTSMVEEPSKSEPCFSAGKDSFDKPNKNSFSKSIASISNSLSFDEPFTRDISPKSARSDKAYQTESKINGKHEIAGHGMEQVAGNEVEKHKVAKNLEGSPDNKNPLNGESPNLDLGNEESTKLIKRSPRKKSVAKRSFGSKPKVGATAKQKTLVSSNRTIQQGEAVNFSSRIKEVPIDNGDKPQPMTDDNNKSEEQETVVKHAEDANGRLETMDDETEAPDDKCEFELGMKHDENKNKADETAEKSEDIHHVTECEAAVPEKETAELTEKEKAPSVDDSTMKREVKHQVKKRPLSIAKKATVAKGLQKSKVALSENKISMERENVARMKSAEEVSHATDASNKSFAPRKPFGNSEEQKENRPIDEGEQDMPEAKSVANRTNKLSSKPEKINPKQTGYNPPMSEANKRLKTEPPCFILTGHHFLRKDFQQLIKKLKGKVCRDSHQWSYQATHFIAPEPLRRIEKFFAAAASGRWILKTDFLTASNQAGEFVEEEPYEWHDIGLNEDGTIDMEAPRKWRLLKERTGHGAFYGMRIIVYGDCITPPLDTLKRVVKAGDGTILATSPPYTRFLGTGIDYAIVTPGMPRVDLWVQEFLRYEIPCISADYLVEYVCKPSSSLEKHVLYDTHVWAERSFSKHQNRAEETTDIEESISSTPESNDIACEVCGSRDRGDVMLICGDESGSVGCGVGTHIDCCDPPLMDVPEEDWFCSKCIVKRNCSNSPKKRKKGGFSKSKRK* 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0664 1218 MobiDBLite consensus disorder prediction 858 885 - -
Amo09g0664 1218 SUPERFAMILY BRCT domain 7 90 IPR036420 -
Amo09g0664 1218 Pfam PHD-finger 1144 1196 IPR019787 -
Amo09g0664 1218 MobiDBLite consensus disorder prediction 707 733 - -
Amo09g0664 1218 MobiDBLite consensus disorder prediction 746 769 - -
Amo09g0664 1218 MobiDBLite consensus disorder prediction 528 733 - -
Amo09g0664 1218 MobiDBLite consensus disorder prediction 633 652 - -
Amo09g0664 1218 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1194 IPR044254 -
Amo09g0664 1218 MobiDBLite consensus disorder prediction 405 429 - -
Amo09g0664 1218 SUPERFAMILY BRCT domain 908 985 IPR036420 -
Amo09g0664 1218 MobiDBLite consensus disorder prediction 244 285 - -
Amo09g0664 1218 Gene3D BRCT domain 99 223 IPR036420 -
Amo09g0664 1218 MobiDBLite consensus disorder prediction 669 700 - -
Amo09g0664 1218 Pfam twin BRCT domain 111 175 IPR001357 -
Amo09g0664 1218 SMART BRCT_7 106 183 IPR001357 -
Amo09g0664 1218 SMART BRCT_7 1009 1096 IPR001357 -
Amo09g0664 1218 SMART BRCT_7 8 86 IPR001357 -
Amo09g0664 1218 SMART BRCT_7 891 971 IPR001357 -
Amo09g0664 1218 SUPERFAMILY FYVE/PHD zinc finger 1130 1201 IPR011011 -
Amo09g0664 1218 MobiDBLite consensus disorder prediction 490 515 - -
Amo09g0664 1218 ProSiteProfiles Zinc finger PHD-type profile. 1141 1197 IPR019787 -
Amo09g0664 1218 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Amo09g0664 1218 Gene3D BRCT domain 1008 1111 IPR036420 -
Amo09g0664 1218 Pfam BRCA1 C Terminus (BRCT) domain 906 967 IPR001357 -
Amo09g0664 1218 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Amo09g0664 1218 CDD BRCT_TopBP1_rpt7 896 971 - -
Amo09g0664 1218 MobiDBLite consensus disorder prediction 534 558 - -
Amo09g0664 1218 MobiDBLite consensus disorder prediction 746 776 - -
Amo09g0664 1218 Gene3D BRCT domain 2 93 IPR036420 -
Amo09g0664 1218 SMART PHD_3 1143 1195 IPR001965 -
Amo09g0664 1218 Gene3D BRCT domain 891 1007 IPR036420 -
Amo09g0664 1218 ProSiteProfiles BRCT domain profile. 908 981 IPR001357 -
Amo09g0664 1218 MobiDBLite consensus disorder prediction 808 890 - -
Amo09g0664 1218 MobiDBLite consensus disorder prediction 836 856 - -
Amo09g0664 1218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1128 1217 IPR013083 -
Amo09g0664 1218 MobiDBLite consensus disorder prediction 567 581 - -
Amo09g0664 1218 MobiDBLite consensus disorder prediction 584 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0664 Amo-Chr9 10741478 10749464 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0664 129 235 Core DNA Replication Machinery Family AT4G02110 63.551 1.45e-35 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo09g0664 BRCT 2.3e-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0664 K10728 - vvi:100257310 912.909