Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0656 ATGGCTTCTCCTCCTCCCTTATCACTAGACGTCGTCGGATCAGACACCGTTACAACAACAGTTTCTAGCTCAAGCACAACGCCACCACGCCGTTCATCTCCGTTACAGAACCTCAGCCCAAGCATCCTTATCATCGTAACGGTTCTTGCCGTCACCGTTATAGTCTCCCTCGCACTCTGTTTCCTCCTCCGCCACATCAACCGCCGCTGCCTACGCCGACTCTCTCGTTTCTCAGCCACGCCATCTTCCTCCGCCACGCCAATCTTCACCTCCAGCCGCCGAATCTCGCCGGAAGTCCCTCAAACCTCTTCCACTTCCTACTCTTACATCATCGACTCCCTACCGCTTTTCACCTTCTCCTCCGTCACTCGCCGCTCCTCCGCCGCCGACTGCGCCGTTTGCCTCTCGAAGTTCCGTAACGACGATCTCCTCCGCCTCCTACCTATCTGCTGCCACGCCTTCCACGCCGAATGCATTGACACCTGGCTTCAGTCCAACCTCTCCTGTCCGCTCTGCCGATCCGCCATTGTCGCCACCGAATCGGACCTCGGCAAGGTCCTCCGCTCGTCTTCCTCCACCGCCGGCAGTGACAGTTTCCGCCTCGAGATAGGGAACGTGAGCCGCCGCGGCACCGCGCCCGATGGCTCCGCCGCAGTTTCTGGCGAATCCCGCGCCGGAGGCGCAAGGTCTAGGTCATACTCCATTGGATCGTTCGAGTATTTCGTGGACGAAGATTCGGAAGTTCCATTCAGCCACGCTCATCGAAGAAGCACGTCCGATCAGAAGGACATTCCGGCGTCGGCGGAGGCTCCGGCGAGTCAGCATGAAGCGAATCTCGCCGGCGATGTTGGCGGCGTAAGGAGCTGGCTGAAGGAGTACATGGATAGAGTCTCAGCTTCTATATCGACACGAACGGCGTCGTTTCGAAGTTCTGGAAGGTTCTTCAGCGGTACTGGTGGGAGTAGTCGCCGAAGCGACGTCGTTCCAGTCGTAGCTGCAGAATATGACATTGAAGGTAACAGAATTGGTGAAGAGATCACCGAAATGTTTCGCTGGCTCTCAGGGGTATGA 1071 0.5761 MASPPPLSLDVVGSDTVTTTVSSSSTTPPRRSSPLQNLSPSILIIVTVLAVTVIVSLALCFLLRHINRRCLRRLSRFSATPSSSATPIFTSSRRISPEVPQTSSTSYSYIIDSLPLFTFSSVTRRSSAADCAVCLSKFRNDDLLRLLPICCHAFHAECIDTWLQSNLSCPLCRSAIVATESDLGKVLRSSSSTAGSDSFRLEIGNVSRRGTAPDGSAAVSGESRAGGARSRSYSIGSFEYFVDEDSEVPFSHAHRRSTSDQKDIPASAEAPASQHEANLAGDVGGVRSWLKEYMDRVSASISTRTASFRSSGRFFSGTGGSSRRSDVVPVVAAEYDIEGNRIGEEITEMFRWLSGV* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0656 356 MobiDBLite consensus disorder prediction 1 35 - -
Amo09g0656 356 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 323 - -
Amo09g0656 356 CDD RING-H2_PA-TM-RING 130 173 - -
Amo09g0656 356 SUPERFAMILY RING/U-box 108 178 - -
Amo09g0656 356 SMART ring_2 131 172 IPR001841 -
Amo09g0656 356 Pfam Ring finger domain 130 173 IPR001841 -
Amo09g0656 356 MobiDBLite consensus disorder prediction 251 278 - -
Amo09g0656 356 MobiDBLite consensus disorder prediction 12 35 - -
Amo09g0656 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 182 IPR013083 -
Amo09g0656 356 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Amo09g0656 356 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 2 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0656 Amo-Chr9 10612096 10613169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0656 20 201 C3H Transcription Factor Family AT4G28890 35.135 1.85e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0656 K10663 - gmx:100817751 446.817