Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0576 ATGAAAATGGCAGCTTTAGAATCAAGTCTGAGAGTGTTAGCAGGAGGAGTTCATCCTTCTTGGTGCACCAACAACAGAAAAGCACCCCAAACCATATCCATAAGGCTCCTACGCACACGTGTCTGCACCTCTGTTGCTTCTTCCACTTCCACTTCCACTGCCACTACCCCTACACCTTTGCATTTCCAACATGAACTTCTCCAGCACACCACAAACCTCAAGAAGCTTTACGCCTCTAACTTGCCCTGGTCACTCTCCCCCGCCGACGTCAAGGCTCTCTTTTCTCAATGCGGAACGGTTACCGATGTTGAGATGATAAAGAACAAGGATGGTGGATTGACTGGCTTCGCCTTCATTACCATGTCTTCTGCCCAAGAGGCTCAGGCTGCTATTCATAAATTCCACTCTCTTCAAATATCAGGCCGGACAATTAAAGTAGAGCTTGCAAAGAGATTTAAGAAACCCCGTCCTCCAGGTCCTCCTGCCGGAGAGACGCGTCATAAAATTTATGCATCCAATCTTGCTTGGAAAGTAAGATCTGGCCATCTCAGAGAATTCGTCACTGAGAATTTTAGAGAACCAGTTTCAGCCAGAGTTGTGTTCGATAGTTCTTCTGGAAGATGTGCTGGGTATGGATTTGTTTCTTTTGTTACAAAGGAGGAAGCAGAGGATGCCATTTCTTCTTTGGATGGGAAGGAATTAATGGGGCGAGCGGTTCGCCTAAAATTTAGCCGAAAGACCATTGAAGAAGCTGATACTGATAGTGGCAAAGAAGAGCAGGGTTATCATGATCAATTGGAAGCACCATAA 810 0.4593 MKMAALESSLRVLAGGVHPSWCTNNRKAPQTISIRLLRTRVCTSVASSTSTSTATTPTPLHFQHELLQHTTNLKKLYASNLPWSLSPADVKALFSQCGTVTDVEMIKNKDGGLTGFAFITMSSAQEAQAAIHKFHSLQISGRTIKVELAKRFKKPRPPGPPAGETRHKIYASNLAWKVRSGHLREFVTENFREPVSARVVFDSSSGRCAGYGFVSFVTKEEAEDAISSLDGKELMGRAVRLKFSRKTIEEADTDSGKEEQGYHDQLEAP* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0576 269 PANTHER OS02G0815200 PROTEIN 43 261 - -
Amo09g0576 269 SMART rrm1_1 75 147 IPR000504 GO:0003723
Amo09g0576 269 SMART rrm1_1 168 242 IPR000504 GO:0003723
Amo09g0576 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 239 IPR000504 GO:0003723
Amo09g0576 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 145 IPR000504 GO:0003723
Amo09g0576 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 151 IPR000504 GO:0003723
Amo09g0576 269 MobiDBLite consensus disorder prediction 246 269 - -
Amo09g0576 269 Gene3D - 165 267 IPR012677 -
Amo09g0576 269 Gene3D - 62 164 IPR012677 -
Amo09g0576 269 PANTHER CHLOROPLAST, PUTATIVE-RELATED 43 261 - -
Amo09g0576 269 SUPERFAMILY RNA-binding domain, RBD 69 159 IPR035979 GO:0003676
Amo09g0576 269 SUPERFAMILY RNA-binding domain, RBD 155 248 IPR035979 GO:0003676
Amo09g0576 269 CDD RRM_SF 76 147 - -
Amo09g0576 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 246 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0576 Amo-Chr9 8021462 8024287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0576 76 257 Eukaryotic Initiation Factors Gene Family AT4G34110 28.342 1.33e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0576 - - lang:109349094 244.973