Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0548 ATGGTAGATTTCAGAAAATCAGCATCAGCTAAGCCTAAAAATACTGGCGGCCCTACGACTGTGATCGCCGTGACCAGTGGCCGGAAAAGCCAATACGCCATCCAGTGGGCCGTAGAACATATTCTGAAGAAGAATTCCTCTTGCATTCTCATTCACGTTCAGACCAATCGTTTGTACCACCAGAATGGTGTTGGCCCTAGTCATTGTCGTCCACCAACTGAAGAAGAATGGCAGCGGATTTTTCTCCCTTTCAGAGGGCTTTGTGCTCGAAAAGGGATTGTAGTGACAGAGTTGGTGTTACAAGGCGCTAATGTTACAAGTGCACTTACTCAATACGTAAATGAAAACTATATTAGTAGCGTCATTGTTGGTGCTTCCCAATGGAATTCTTTTATAAGCTTAGCCAAGTCTTTGGCAGATTTTTGCTCAATATATGTTATATCGAAAGGAAAAGTCCAAACTATCCATCCAGCAGGTCCTGCTCAAAATGGTAAATTCACAAAAGCAGCAACAGTAAAAGGGGTAGCAACGCCAGATTATTTTTTAAACAATTCACCTCAACATATAAACAGCTTGGTCAAAGATGCTACATTATCAATGACACCAAGTAATTTTTCACCAATGGAACAAAGTCCAACAATATCCTTTGGAGGCTCTTCACCACAAACCGACAATGATCTTGAATTCGCAAAGTCACAAGTCACTTCATCAAAATCCAAAAAAAAAATGGAGGAAGAATTAATGAAATTAAAACTTGAACTAAAGAAAACAAATGAGCAATATGGATTTTTCTGCAAAGAAGTCGACTCTGCGCATAAGGGAGTGGAAGAGCATGAAAAGGCTAAGCTTTCAAGGCAGAAAACAGTGCATGCTATGGAAAACGAGGAAAATCAAGGAGCTTCAAGTTCTGCCTACATTTATAAAAACATCGTTCCATACAGAAGATACAACATTAAAGAAATAGAAATTGCAACTAATTACTTTGATATTGATCTCAAAATTGGAGAAGGTGGTTATGGACCAGTTTTTAAAGGAGTAATTGACAACACTGATGTTGCCATCAAGGCTGTGAGGCCAGATATAAGCCATGGGGAAAGACAATTTAACCAAGAGGTTCAAGTTTTGAGCACCATAACACATCCAAACATGGTACTCCTGATAGGTGCATGCCCAGAATTCGGATGTCTTGTGTATGAATATATGGACTACGGAAGTTTGGAAGATCGTTTATTCAGAAAAGGAAACACTCCTCCAATCCCATGGAAAATCCGTTTCAAAATAGCATCGGAAATCGCCACGGCCCTTCTCTACCTTCACCAACTAAAACCAGAGCCACTAGTCCACCGTGACCTCAAGCCAGCAAATATCCTCTTAGACAGAAACTATTTAAGCAAGATTGGCGACGTCGGTCTTGCCAGGCTCGTTCCGCCTTCGGTCGCTGACAAAACTACCCAGTACCGGCTGACGAAAGCCGCCGGCACATTCTGTTATATCGACCCGGAGTATCAACAGACAGGGTTGTTGGGTGTGAAATCGGACATATATTCATTTGGTGTGATGCTGCTTCAGATTATAACTGCAAAGCCTCCAATGGGGTTGGCTCATTTGGTTCAGAGCGCTATTGATGCTGGTAGCTTTGAACAAGTTCTTGATCCTAGTTTGAATGATTGGCCTGTTGAAGATGCTTTGTCTTGTGCTAAGTTGGCATTGAAGTGTTGTGAGATGAGAAAACGAGATAGACCCAGTCTTGCTACTGTTTAA 1761 0.4157 MVDFRKSASAKPKNTGGPTTVIAVTSGRKSQYAIQWAVEHILKKNSSCILIHVQTNRLYHQNGVGPSHCRPPTEEEWQRIFLPFRGLCARKGIVVTELVLQGANVTSALTQYVNENYISSVIVGASQWNSFISLAKSLADFCSIYVISKGKVQTIHPAGPAQNGKFTKAATVKGVATPDYFLNNSPQHINSLVKDATLSMTPSNFSPMEQSPTISFGGSSPQTDNDLEFAKSQVTSSKSKKKMEEELMKLKLELKKTNEQYGFFCKEVDSAHKGVEEHEKAKLSRQKTVHAMENEENQGASSSAYIYKNIVPYRRYNIKEIEIATNYFDIDLKIGEGGYGPVFKGVIDNTDVAIKAVRPDISHGERQFNQEVQVLSTITHPNMVLLIGACPEFGCLVYEYMDYGSLEDRLFRKGNTPPIPWKIRFKIASEIATALLYLHQLKPEPLVHRDLKPANILLDRNYLSKIGDVGLARLVPPSVADKTTQYRLTKAAGTFCYIDPEYQQTGLLGVKSDIYSFGVMLLQIITAKPPMGLAHLVQSAIDAGSFEQVLDPSLNDWPVEDALSCAKLALKCCEMRKRDRPSLATV* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0548 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Amo09g0548 586 Pfam Protein kinase domain 331 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g0548 586 ProSiteProfiles Protein kinase domain profile. 328 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g0548 586 Gene3D Phosphorylase Kinase; domain 1 307 400 - -
Amo09g0548 586 SMART serkin_6 328 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g0548 586 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 21 139 - -
Amo09g0548 586 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 19 296 - -
Amo09g0548 586 MobiDBLite consensus disorder prediction 1 20 - -
Amo09g0548 586 Coils Coil 240 260 - -
Amo09g0548 586 PANTHER OS02G0152300 PROTEIN 19 296 - -
Amo09g0548 586 CDD STK_N 19 150 - -
Amo09g0548 586 SUPERFAMILY Protein kinase-like (PK-like) 303 585 IPR011009 -
Amo09g0548 586 Gene3D HUPs 19 146 IPR014729 -
Amo09g0548 586 PANTHER OS02G0152300 PROTEIN 287 586 - -
Amo09g0548 586 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 287 586 - -
Amo09g0548 586 Gene3D Transferase(Phosphotransferase) domain 1 401 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0548 Amo-Chr9 7300482 7305750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0548 20 586 Receptor kinase-like Gene Family AT1G17540 41.791 1.35e-176 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Amo09g0548 Pkinase 1.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0548 - - ahf:112778050 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1043 19 18161462 18167347 Amo09g0548 09 7300482 7305750 hybridization