Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0533 ATGGACACTATGCACTCTGTTCTCAAGCAATATTTTGGGTTTTCAGATTTTCGGCCTTATCAGAAAGATGCCATTCAGAAAATTATTGAGAAAAGGGACTGCTTGGTACCACCCTTGGTTGTTAGAAAGACTGGGATAGTTGTTAGCCCTCTAATATCATTGATGCAAGACCAGGTAATGGCTTTAAAACAGCGGGGCATCAAGGCTGAATATCTTGGAAGTGCTCAGAAGGATTCCACTGTTCAGAGAAAAGCCGAGCAGGGTCAATTTGACATTTTGTTCATGACTCCGGAAAAGGCTTGCTCAGTTCCTACCAGTTTCTGGTCTAACTTGCTGAAGGAAGGAATTAGCCTTTTTGCTGTTGATGAAGCTCATTGTATATCAGAATGGGGGCATGATTTTAGGGTGGAATACAAGAACTTACACAATTTACGTGGTGTTCTACTAGATGTTCCTTTTGTTGGCTTAACTGCCACAGCTACTGAAAAGGTTCGATTTGACATTATCAACTCCCTGAAGTTGAAGAATCCATATGTTTTGGTTGGTTCATTTGATCGCTCCAATCTTTTCTATGGGGTCAAGCCATTTAGCCGTGGACCATCTTTTGTTAATGAACTTGTACAAGAAATTTCAAAAGTTGTTAGTAGTGGTTCAACTATAATTTACTGCACAACAATAAAGGACGTAGAGCAGATATCCAAGTCACTTGCAGAAGCAGGAATTGAGGCTGGAATGTACCATGGCCAAATGGATAAAAAATCTCGTGAAGAGTCTCATAGGTTATTTGTCAGGGATGAACTGCAAATCATGGTGGCTACAATTGCTTTTGGCATGGGCATAGATAAGCCTAACATAAGACAAGTGATTCATTATGGTTGCCCTAAGAGTCTTGAGTGCTACTACCAGGAAAGTGGACGCTGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTATTACACAAGAAGTGACTTTGCAAAGGGTGACTTTTATTGCGGAGACCTAAAAACAGAAACCCAAAAAAGAGCTGTTATGGAGTCATTGCTTGCTGCTGAACGTTATTGTGTGCTTGCAACTTGCAGGAGAAAGTTCTTGCTTGAACACTTTGGGGAACAATATCCAGCTGATAGATGTGGAAACTGTGATAACTGCACAGTCTCAAAGAAGGAGCGCGACATGTCTAGAGAAGCATTTCTTCTAATGGCTTGCATTCATTCATGCAAGGGAAAATGGGGTCTTAATATGCCCATTGATATCTTGCGTGGGTCTCGAGCGAAAAAGATTCTCGATGCTCAGTTTGATAAGCTTCCCCTTCATGGACTTGGAAAAACTTACGCACCAAACTGGTGGAAAGCACTCGGGCATCAATTGATCGCTCATGGTTATTTGAAGGAAACTGTCAGTGATGTGTACAGAACTATAAATCTTATTATGTTTCAAAGTGAATGTATACCCAGCTATAAAATGTGTTCTTCATGGATCAGTGTCAGTTTAAAAGGAGAACAATTTTTGGCCTCTTCTACACCTGATTATCATTTATCAACCACTGACTTGTTGGAACTGCTCCGTAGGTTTTTATTAATTTTTGAAACATTTTTAAGGCAACCAATTCTTGCAATTCCTTTGATCGATACTTTTTTTATAAAGCTCTTTTACCTTCTTTGTAGATATGCCATATGTGGCGATCAAACAATCAAGAAAATTACTCTTGTAAGACCATCTACAAAAGCAAGGCTAGCAAACATTGATGGTGTGAATCAGCACCTAGTAACAAAATATGGAGATCATTTTCTTAGAGTTATCCAGCAACTGTCACAAGGATTAAACTTATCATTGGACGGGGAAGCTAATTTACTAAATAACGAAAAGTTGACACCAGCAAAGTTTGAAGCATGGAAAATGTGGCATGAAGATGGTCTTTCTATTCAGATGATTGCTAACTTTCCAGGTAGATCAGCTCCTATAAAAGAGCAAACTGTTGCTGAATATCTGTTGGAAGCTGCACAAGAAGGATTACCTTTTGATTGGAGTAGATTCTGTGAGGTGATAGGACTGACGCAAGAGATCGAATCTGAAATTCAGGGTGCTATTTTAAAGGTTGGATCTAAAGATAAGCTGAAGCCTATAAAAGATGAATTGCCAGAAAATGTCACTTATCAGCACATCAAGACTTATTTGACAATGCAAAGCTGTGGTGTATCCAAAGATGACATCCAGGCTCAGAAAGACAGCGAATCGGAAATACAGCAAGTGGAAACGCATTGTGAAGCCAACATTTCTGAGCACAGCTTGATGGAAAAATGTGACTTGGAAATGGATATAGTACCATCTAGACCAGTGGAATTCACAACCAAACGTCAGAAAGTCAGTGACATGAAGGAAATAAATTCAACTGACTTTAAAGCTACTGAGAATTCTATATTAGAGTGGCTAAAGCACCATGATGAAGGGGCTACTTTGGTTGAAATTCAAGGGCACTTCAACGGGTCTGGCAAAGATTGTGTGGTTGATCTGCTGAATTTATTGGAAAGTGACTTTTTAATTTATAAAAAAGGTGGCATGTATAGGGTCCTGTAA 2577 0.3943 MDTMHSVLKQYFGFSDFRPYQKDAIQKIIEKRDCLVPPLVVRKTGIVVSPLISLMQDQVMALKQRGIKAEYLGSAQKDSTVQRKAEQGQFDILFMTPEKACSVPTSFWSNLLKEGISLFAVDEAHCISEWGHDFRVEYKNLHNLRGVLLDVPFVGLTATATEKVRFDIINSLKLKNPYVLVGSFDRSNLFYGVKPFSRGPSFVNELVQEISKVVSSGSTIIYCTTIKDVEQISKSLAEAGIEAGMYHGQMDKKSREESHRLFVRDELQIMVATIAFGMGIDKPNIRQVIHYGCPKSLECYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDLKTETQKRAVMESLLAAERYCVLATCRRKFLLEHFGEQYPADRCGNCDNCTVSKKERDMSREAFLLMACIHSCKGKWGLNMPIDILRGSRAKKILDAQFDKLPLHGLGKTYAPNWWKALGHQLIAHGYLKETVSDVYRTINLIMFQSECIPSYKMCSSWISVSLKGEQFLASSTPDYHLSTTDLLELLRRFLLIFETFLRQPILAIPLIDTFFIKLFYLLCRYAICGDQTIKKITLVRPSTKARLANIDGVNQHLVTKYGDHFLRVIQQLSQGLNLSLDGEANLLNNEKLTPAKFEAWKMWHEDGLSIQMIANFPGRSAPIKEQTVAEYLLEAAQEGLPFDWSRFCEVIGLTQEIESEIQGAILKVGSKDKLKPIKDELPENVTYQHIKTYLTMQSCGVSKDDIQAQKDSESEIQQVETHCEANISEHSLMEKCDLEMDIVPSRPVEFTTKRQKVSDMKEINSTDFKATENSILEWLKHHDEGATLVEIQGHFNGSGKDCVVDLLNLLESDFLIYKKGGMYRVL* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0533 858 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 4 719 - -
Amo09g0533 858 Pfam RecQ zinc-binding 336 385 IPR032284 -
Amo09g0533 858 PANTHER DNA HELICASE RECQ FAMILY MEMBER 4 719 - -
Amo09g0533 858 Pfam DEAD/DEAH box helicase 25 164 IPR011545 GO:0003676|GO:0005524
Amo09g0533 858 Pfam RQC domain 389 473 IPR018982 GO:0006260|GO:0006281|GO:0043138
Amo09g0533 858 CDD SF2_C_RecQ 186 320 - -
Amo09g0533 858 Gene3D HRDC domain 554 610 IPR044876 -
Amo09g0533 858 Pfam Helicase conserved C-terminal domain 204 310 IPR001650 -
Amo09g0533 858 Gene3D - 186 386 IPR027417 -
Amo09g0533 858 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 205 355 IPR001650 -
Amo09g0533 858 Pfam Helix-turn-helix domain 630 726 IPR029491 -
Amo09g0533 858 SMART helicmild6 230 311 IPR001650 -
Amo09g0533 858 Gene3D - 387 522 IPR036388 -
Amo09g0533 858 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 34 178 IPR014001 -
Amo09g0533 858 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 325 IPR027417 -
Amo09g0533 858 SMART RQC_2 392 510 IPR018982 GO:0006260|GO:0006281|GO:0043138
Amo09g0533 858 CDD DEXHc_RecQ 5 185 - -
Amo09g0533 858 Pfam HRDC domain 556 601 IPR002121 GO:0003676
Amo09g0533 858 SUPERFAMILY HRDC-like 556 606 IPR010997 GO:0000166|GO:0044237
Amo09g0533 858 SMART ultradead3 13 194 IPR014001 -
Amo09g0533 858 SUPERFAMILY "Winged helix" DNA-binding domain 383 468 IPR036390 -
Amo09g0533 858 Gene3D - 1 184 IPR027417 -
Amo09g0533 858 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 6 443 IPR004589 GO:0004386|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0533 Amo-Chr9 7040066 7051317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0533 220 327 Eukaryotic Initiation Factors Gene Family AT3G19760 27.778 5.19e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0533 K03654 - gmx:100797777 1230.7