LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo09g0520	ATGTACATATTTATGCTTTCTAATTGTGATATTGAATGGTGTAGAAGCAAACTGAGGCAGACAGGGTGCACTTCTTTATCTCCAATGTCATCTTCCAAAGCTTTCCAAATAAAACTTGTTGTATTTGTTGGTCTCTTATTTGTCTCAAAATTTAAGGGCATGGAAGAAAATATGATGTCTGAAAATTCTTATTCATATACTGATAAAACTTTAACTTTCCCAGCTCCTCAAATAAAATATGATGTCTTTGTTAGCTTTAGGGGCACAGATATTCGCCAAGGTTTGCTGAGTCATTTGATTAAGGCATTTCATCTAAAACAAGTTTTTGCCTTTGTTGATGACAAGCTTGAGAGGGGAGATGACATATCACAGGCACTTTTTGGAGCAATAGAAAAGTCGCTGATTTCATTGGTGATATTCTCACAAGACTATGTTTCTTCGAGATGGTGTTTAGAAGAACTTGTGAAAATAGTGGAGTGTAGAGAAAAAGATGGACAAACCGTAATACCTGTTTTTTACAAAGTAGATCCATCAGATGTACGATATCAAAAGGGCACCTTTGCAAATGTGTTTGCTGAACACGAGGAAAGGTATGGTATGATCAAGGTGCAAAACTGGAGAACTGCTTTGAAAAATTCTGCTGATTTATCAGGATTTCACTCGACAAATTTTAGGAATGATGCTCAGCTTGTTGATCAGATTGTTGATTTTATATCATCAAGATTAAATGACATGCATCAGGTTAAATCAAAAGGACTTGTTGGAATTCACAAACCAATTGCACAGTTAGAGTCGTTGATGCTCAAAGAATCCGAAGACGTACGTGTTATTGGAATTTGGGGTTTGGGCGGTATTGGTAAGACAACCATTGCAGAAGAAGTATACAACAGAATGTGTGCCAAATTTGAATCTTGTTGTTTCTTGGCAAATGTAAGAAAAGAGTCAGAAAGAGATGGAATAATGTCTTTGAAGAAGAAACTCTTTTCTACACTATTGAATGAACAAAATTTGAGAATTGACTTACCAAAGGGATTGCCTGATTATGTTGAGAAAAGGCTTGGGCGCATGAAGGTTCTCATTGTTCTAGATGATGTGAATGATTCTGACCAGTTAGAAACTTTAATTGGAGCTCGTGATTGGTTTGGATTAGGCAGTAGAATCATTATAACAACTAGAGATAAGCAAGTGCTAGTCGGAGAAGCTGAAGAGATATACCAAGTTGAGGAATTGGATTGTGATGAATCTCTTGAACTCTTCATTCTAAATGCCTTCAAACAAAACCAGTTTGAAATGGAGTATTGTGAGCTGTCAAGGAGGGTGGTCAAGTATGCCAAAGGCATTCCATTAGTTGTTAAAGTTTTGGCTCAACTTCTTCGTGGCAAACGAAAGGATATATGGGAAAGTCAATTGGAGAAACTTAAAAGAATGCCTAATAAGAAAGTTCATGATATAATGCGGCTGAGCTATGACGATCTTGATCGTCAAGAGAAACAGATTTTCTTAGACATTGCCTGTTTTTTCAATGGATTGAAGCTCAAGTTGGAATACATAAACGTTTTACTAAAAGACCAAGATTATGCAGTGGCTGCTGGGATGGAAAGGCTGAAAGATAAGGCTCTTATAATTATTTCTGAGCACAATATTGTATCTATGCATGATATTATTCAAGAAATGGCTTGGGAGATCATTAAAGATGGCTCTGCTGAATACCCTGGAAACCAACGTCGGTTATGGGATTCTCACGACATATATCAAGTATTGAAAAACAACAGGGGGAATGAGGCCATTAGAAGCATATCCTTCAACTTTTCAGCAATTAAGGACCTTCAGTTAAGCCAAGAAGTCTTTGCTAAGATGAGCAAACTACGATTTCTAAATTTCTATAGCAACATATCTCAAGAGGCCACGTATAGTTCTGATGGACTTCCATCTTCGTGGAACAAAGGCCTGTGTCTTCCTCAAGAACTTGATTCTTTGTCAAATGAAGTAAGATACCTTAGTTGGATGCATTACCCTCTGGATGCCTTGCCAACCAACTTTTCTGCAGAAAATCTAGTAATATTGGACTTGTCCTTCAACCGAATGGAAAAACTTTGGTGTGGGGTGAAGAATCTGGCAAATTTAAGGATCCTTAGATTATATAATTCCTTACACCTGACCATGCTGCCAGACTTGTCGAAAGCCAGAAACCTTGAAATACTAGTTATTCGCAAGAGTTTCAGTTTCCTTTATGTACATCCGTCTGTTTTTTGTCTCAACAAGCTTGAGATATTGGATCTAGGAGGGTGCGTTTCCCTTAGGCAGCTCCGAAGCGATATCCATTTGAGCTCTCTCCGTTCTCTCTCTCTCGCCGGCTGCGTAAGGCTACAGGACTTCTCAGTTACCTCAGAGAATCTGGAAGAGCTGAACTTAGAGCTCACAGGTATCCAACAACTACCGACATCCTTTTGGCGCCAAAGCAAACTCGAAACATTACATCTAGGATTGTCTGATATTCAGAGCATTCCTGAAACCATCAAGAATCTCACAAGGTTCAAGTATCTTAGCATCAGATATTGTTGGAACCTCAGGGATTTACCAGAGCTTCCCCCATCTCTTGAGTATCTAGACGCCACCGGATGCGCATCACTCAAGACAGTGTTGTTTCCATCGTCGGCTGCCTTGCAGCTTAAGGAAAACAGGAAAAGCATTTTGTTCTGGAATTGCTTGAAATTGGATCAACACTCCCTTGGGGCTATTGAATTGAATGCACGAATCAACCTCATGAAATTTGCATACCAGCATTTATCATCATTAACACATGACTACTATAAAGATAATGACAATGAAGCCATCTATGTGTATCCAGGAAGCAATGTTCCAAAGTGGTTGGAGTATAGAACATCACATGATTACGTAAATGTTGATATCTCTTCTTCGACTGCGCCACATTCCCCTTCGTTGGGCTTCATATTTTGCTTCATTGTTCCACGAATCCTCTCGGATGGTTTTGCTTTCAGGTTTACCATAAGTGTTGGTGAAGATGAAGGAAACAATGTCAAATTTTACTTGAAGAAACCACTTGAAAAAATTGTTTCAGATCATGTGTTTCTCGTGTATGATCACCGGCTTACTCACTTCCTTAATAGCAGAAGCAATGTTGAAGTTCAACAGAGGCTTAAAATTAAGGTTGCGGCGGTGACAGACAGGGAAATCAGATTATGTGCCTGTGAAGCTAAAAGGGTTTGGAATCAGTCCAATAAAAGCATCAGAATATCAAAATTTCATTCAGAAAATGGAATTGGTTGA	3288	0.3866	MYIFMLSNCDIEWCRSKLRQTGCTSLSPMSSSKAFQIKLVVFVGLLFVSKFKGMEENMMSENSYSYTDKTLTFPAPQIKYDVFVSFRGTDIRQGLLSHLIKAFHLKQVFAFVDDKLERGDDISQALFGAIEKSLISLVIFSQDYVSSRWCLEELVKIVECREKDGQTVIPVFYKVDPSDVRYQKGTFANVFAEHEERYGMIKVQNWRTALKNSADLSGFHSTNFRNDAQLVDQIVDFISSRLNDMHQVKSKGLVGIHKPIAQLESLMLKESEDVRVIGIWGLGGIGKTTIAEEVYNRMCAKFESCCFLANVRKESERDGIMSLKKKLFSTLLNEQNLRIDLPKGLPDYVEKRLGRMKVLIVLDDVNDSDQLETLIGARDWFGLGSRIIITTRDKQVLVGEAEEIYQVEELDCDESLELFILNAFKQNQFEMEYCELSRRVVKYAKGIPLVVKVLAQLLRGKRKDIWESQLEKLKRMPNKKVHDIMRLSYDDLDRQEKQIFLDIACFFNGLKLKLEYINVLLKDQDYAVAAGMERLKDKALIIISEHNIVSMHDIIQEMAWEIIKDGSAEYPGNQRRLWDSHDIYQVLKNNRGNEAIRSISFNFSAIKDLQLSQEVFAKMSKLRFLNFYSNISQEATYSSDGLPSSWNKGLCLPQELDSLSNEVRYLSWMHYPLDALPTNFSAENLVILDLSFNRMEKLWCGVKNLANLRILRLYNSLHLTMLPDLSKARNLEILVIRKSFSFLYVHPSVFCLNKLEILDLGGCVSLRQLRSDIHLSSLRSLSLAGCVRLQDFSVTSENLEELNLELTGIQQLPTSFWRQSKLETLHLGLSDIQSIPETIKNLTRFKYLSIRYCWNLRDLPELPPSLEYLDATGCASLKTVLFPSSAALQLKENRKSILFWNCLKLDQHSLGAIELNARINLMKFAYQHLSSLTHDYYKDNDNEAIYVYPGSNVPKWLEYRTSHDYVNVDISSSTAPHSPSLGFIFCFIVPRILSDGFAFRFTISVGEDEGNNVKFYLKKPLEKIVSDHVFLVYDHRLTHFLNSRSNVEVQQRLKIKVAAVTDREIRLCACEAKRVWNQSNKSIRISKFHSENGIG*	1096

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo09g0520	1095	Pfam	TIR domain	79	253	IPR000157	GO:0007165
	Amo09g0520	1095	Gene3D	-	77	245	IPR035897	-
	Amo09g0520	1095	SMART	till_3	79	216	IPR000157	GO:0007165
	Amo09g0520	1095	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	66	1059	IPR044974	GO:0006952
	Amo09g0520	1095	ProSiteProfiles	TIR domain profile.	78	242	IPR000157	GO:0007165
	Amo09g0520	1095	SUPERFAMILY	Toll/Interleukin receptor TIR domain	76	219	IPR035897	-
	Amo09g0520	1095	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	66	1059	-	-
	Amo09g0520	1095	Gene3D	-	246	407	IPR027417	-
	Amo09g0520	1095	Gene3D	Ribonuclease Inhibitor	793	881	IPR032675	-
	Amo09g0520	1095	SUPERFAMILY	L domain-like	602	951	-	-
	Amo09g0520	1095	Gene3D	-	409	493	IPR042197	-
	Amo09g0520	1095	PRINTS	Disease resistance protein signature	444	458	-	-
	Amo09g0520	1095	PRINTS	Disease resistance protein signature	352	366	-	-
	Amo09g0520	1095	PRINTS	Disease resistance protein signature	276	291	-	-
	Amo09g0520	1095	PRINTS	Disease resistance protein signature	750	766	-	-
	Amo09g0520	1095	Gene3D	Ribonuclease Inhibitor	567	792	IPR032675	-
	Amo09g0520	1095	SUPERFAMILY	"Winged helix" DNA-binding domain	479	588	IPR036390	-
	Amo09g0520	1095	Pfam	NB-ARC domain	268	490	IPR002182	GO:0043531
	Amo09g0520	1095	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	241	503	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo09g0520	Amo-Chr9	6662276	6666559	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo09g0520	80	871	WRKY Transcription Factor Family	AT4G12020	30.984	4.95e-102	352

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo09g0520	-		-	ahf:112710439	2159.41