Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0515 ATGTTAGTCTTTTACTTTTTAATTCCTAGTTTGACATTGTTGAAGAGAAGGTGCAGAGAACTCAGCATCAATCGCTGGCCTCATAGGAGGATCAAAAGCTTGCATTTACTCTTACAAAATCTTATACTTATAATTATTGGGCTGATCAATGATTGA 156 0.3462 MLVFYFLIPSLTLLKRRCRELSINRWPHRRIKSLHLLLQNLILIIIGLIND* 52
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0515 51 ProSiteProfiles RWP-RK domain profile. 1 51 IPR003035 -
Amo09g0515 51 Pfam RWP-RK domain 10 34 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0515 Amo-Chr9 6609636 6609791 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0515 10 41 AtRKD Transcription Factor Family AT5G53040 65.625 9.39e-10 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Amo09g0515 RWP-RK 4.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0515 - - aip:110264064 56.6102