Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0506 ATGGACAATGAGCTTGAGCCAGGGGATAAAATTTCACAAAATCTTCTCCAATCAATTGAGGCATCGTTGATTTCGTTGGTCATATTCTCTGAGCGTTATGCTTTTTCTCGTTGGTGCTTGGATGAGCTTGCGAAAATAATGGAGTGCAGAACAAAATACGGACAGATTGTTATTCCTGTTTTTTATAAAGTGCATCCGTATGATGTACGACATCAAAAGGGGACTTTAACCAATGCATTTCATGCATATGAGAAATACATTGGTGAGGAAAATGTGCAAAGATGGAGATCTGCTTCTAAGGAGTTAACTACTTTACCAGGATTTGTTTCATCAACGTTTAGGAATGATGATGAGCTTATTGAAAAAATCATCCAACACGTGAATAATAGGTTGAAAAGAATGCGCCAAGTTTATTCAAGAGCACTTGTTGGAATTGGCAAATCAATTGCTCGTGTAGAATTCTTACTACGCGAAGAGCCAGAAAACGTCCGTGTGATTGGGATTTGGGGAATGGGTGGTATAGGAAAGACAACAATTGCTGAAGAAGTTTATAACCTACTGTGTGATGAATACGAAAGTGTTGTTTTTCTAGGAAACGTAAGGGAAGAATCCCTGAGACATGGAATAATTTATTTGAAGAGTGAACTCTTCTCCAAACTCTTAGGTGAAAATCTTGAAATTTACACACAAAATGGATTGCCTACTTATGTTGAGAAGAGAATTGGTCATATGAAGGTTCTTATTGTTCTTGATGATGTTGCTGAATCAGAGCAATTGAAAATTTTAGTTGGAAATCCTCAATGGTTTGGATCAGGAAGTAGAATTATTGTAACAAGTAGAGATAGGCAAGTGCTTGCAAACTATGCTTCTGATAATGCTGTGTACAAGGTGGAACCATTGGATTTTGATGAAGCACTTCAGCTTTTCAATTTGATTGCATTTCAACAAAATCAAGTTGAAAAGTATAGGGTGCTAGCAGAGAGGGTGGTCAATTATGCAAAAGGCATTCCACTGGTTCTAAAGACTTTGGGTCATCTACTTCATGGAAAAGATAAGAGGATATGGGAAAGAGAATTAGAGAGACTTGGGAAGATATCGAATAAAAAGGTTTTTGATATGATGAGGCTGAGTTATGACGACTTAGATCGCCAGGAAAAATCCATATTTTTGGATATTGCATGCTTTTTTGACGGAATAAAGTTGGAAGTGAATTACCTAAAAACTTTATTGAAAGATGGTGAATATCAAGTACATGCAGCATTAAAAAGACTTGAAGATCTAGCTTTCATAACCATTTCTAAAGAGGATGTTGTAACAATGCAATATATTATACAAGAAATGGCTTGGGAGATTGTTCACCAAGAATCTGTTGAAGAACCTGGCAAGCATAGTCGATTATGGAATCCAGATGACATTTATCATGTACTGAAATATAATCAGGGGACAGAGGCCATTAGAAGCATAAGCTTAAACTATTCAGAAACAACCACTCAGGACATCCAGTTAAGCCCTTGGGTATTTTCTAAGATGAATAACTTGCAATTTCTTGACTTCTATGGAAAGCATGACCTCATAAGGTTGCCTCAAGGGCTTCAATCATTGCCAACTGGAATAAGATATCTTCGCTGGACTTATTACCCTCTTAAATCTTTACCAGATAAATTTTCAGCTAAAAACCTTGTTATATTGGAGTTACCATATAGTCAAGTGGAAGAACTTTGGCATGGTGTCCAGAATCTTGTAGCTCTGAAGGTCCTTAAGGTCCCTTATTCCTCACAATTGAAGGAGATTCCAGACTTATCAAAAGCCACAAATCTTGAGGTAATGGATCTCAAATACTGTATACATTTGACTGGTATGCATCCTTCTGTCTTCTCTCTCAACAAGCTTGAGATATTGGATCTGAGTTGGTGCACTTCCCTTACCAATCTTCAAAGCAGTACTCACATGATATCTCTTCGTTATCTGAGTCTTTCTCACTGCAAGAGATTAAAGAAATTCTCACTGACATCAAAAAATATGATTGAACTGGATTTACGACACACGTCTATCCAAGAACTTCCCTCATCGATTGGATATCAAAGTGAACTTGAGAAGCTTCATTTAGCCAACTCTGACATCAAGAGCTTGCCCACAAGCATCAAGCATCTTACAAGTTTGAAATATCTTGACGTAAGCAATTGCAAGAGCCTTGAAACTCTGCCAAAACTTCCCATCTCTGTGGAAACATTAGATGCAGATAACTGCACGTCTTTAAAGACAATGCTGTTCCCTATCATCAATGAACAAATGAAGGAGAACAAGAGAAGGGTTGTGTTCTGGAACTGTTTGATGTTGCATGAACAATTTCGCAATGCTATTGCGTTGAATGTTCATATCAACATCGTGAGATTTGCAATGCGACATTTGTCCGTGCTAGGACAAGATCATGTTGAAGATTCCAACAATCATGGAGCACACAAAGCCTCGTATTATCAGACAACAACAGATAACCTTACCATTGATCTCTATTCTACTCCATATGCCCCGAATTCGAGCTATGTTTTGTGCTTCGTTGTTCCTAAGGTTCCATCAGAGGGTTTCATGTTGTTGTTTTCCATCAGTGACAATGAAGGTGAGAGTGTAGAGGTGTCCTTGGATAGATCACCAAGTGTGATTTCATCAGACCATGTGTGTTTGATTTATGACCAACGTTGTGCAAACTTCTTGAAAAGAAAAGTTCAAACTCGAAGAATGTTCCAAATCAATGTCTCGGCTGTGTCGATATCTGCTGGATTGGAGAATGTGACTGTGCAGTTGAAAGGGTTTGGAGTCCACCTGGTAAACCCTTTGGAACATCAGATTTTCATATCACAGAAGGCATATGTTGTATTTATTTGTCTCTTGCTTATTCTGAAACCGAAGGGTGTGGCTTCTTCTTCCGAAAATACCCTTAAGATAAAGTATGATGTCTTTGTTAGCTTCAGAGGCCCAGACATCCGCCGAGGTTTTCTTAGTCATTTGGTTGACGCACTTTCTAGAAAGAAAATTAATGGCTTTGTAGATGATAAAATTGAGGTAGGAGATGAAATACCAAACTCACTCATTAGAGCAATCGAGGCATCATTAATTTCACTAGTTATATTTTCACCAAACTATTCTTCTTCACACTGGTGTTTGGAGGAACTTGCAAAAATAGTTGACTGCAGAGAAAAAGAAGGCCAGTTTGTGCTACCAGTTTTTCTTGACGTAGATCCCTCAGATGTGCGGCACCAAAGAGGATCCTATGAGGACGCATTTGTTAAACATGAGAAGAAATATGACTTGGTCAAGGTTCAGCGTTGGAGAACTACTTTGCAAAGAGCTGCTAATTTATCTGGATTACATTCAACAAAATATAGGAATGACTATGGGCTCCTTGAAGCAATCATCAAACATCTGATAAAGAGATTGAATCATGAGCAGAAATATATCTCAAGAGGGCTTATTGGAATTGGCAAATCAATTGCACTCTTAGAGTCAGAATTGAATCCGGAGTTAGGAGACGTGCGTGCTTTGGGAATTTGGGGAATGGGGGGCTTGGGTAAGACAACTCTTGCATGGGAAGTGTTTAACAGCGTACGCTCACAGTACGAAGGTTCTTGTTTTCTGAGAAATTTAAGGGAAAGTTCAGCCAGGGAAGGAATATTTTCTTTGAAGAGCAAACTTTATTCTGAACTCATAGGTGAACCAGGCTTAAAAATTGATAGCTCAAATGGATTGCCCCCTTTTCTTGAGAAAAGACTTGGTCGAATGAAGGTAATCATTGTTCTAGACGATGTCAATGATTTTCGGCAACTGAAAATACTATTTGGAGCAAGGGAACAATTTGGATCAGGTAGTAGAATCATTGTAACATCCAGAGATAAGCAAGTGCTCCATACAGAAGTTGATTTTATCTACCAAGTTAAGCCATTACAAGTTGATGAGGCGCTTCGACTTTTCAATTCAATTGCCTTCAAACACGAACATCGTGATCTTGAGATGGAATTTCGTGAGCAATCAAAAAAGGTGATCGAGTATGCCAAAGGTGTTCCGTTAGTTCTTGAAGTTCTGGGACACCATGTCCATGGAAAAGGGAAAGAAATATGGGAAAGCCTGTTAGATAAGCTTAAAAATATGCCAGACAAAGAGGTCCATAACGTGATGAAACTCAGTTATGATGATCTTGATCGCGATGAGAAAAAGATATTCTTGGATATTGCTTGTTTTTTTAAATGGTTAACTGTGACAGAGGATGATATAAAACTACTTTTGAAGGATGAGATCAATTCTGTGGCTTTTGTGTTAGAAAGGTTAAAAGACAAAGGCCTCATAACTGTTTCTGAAAGAACTGTATCGATGCATGACATTATTCAAGAAACAGCATACGAGATTGTTCGTCAAGAATCTATTGAAGACCCTGGAAAACGAAGTCGATTATGGAGTTTTAATGACATTTATCAAGTGCTAAAAGGTGATAAGGGGAGTGAAGCCATTAGAAGCATCTCCGCCAAGTTGCCATTGCTTAATAAGAAGCTGCAGCTAAGCCCTCAAGTATTTGCAAAGATGAGCAACCTACAGTTTTTGGACTTTTTAGCTCCTTACACGTGTCCTTCTTATTTCCCACAAGAGCCAATGAGTTTGTATTTTCCTCAAGGGCTTGAGTCTTTGCCTAATGAACTAAGGGTTCTTCTTTGGGTGCACTACCCTATGGAAGCCTTGCCAACTCAGTTTTCTGCTGAAAATCTTCAAATACTCTTCTTGCCCGTTAACCGAGTGAAAAAACTTTGGCATCAAGAGCAGAATCTTCAAAGTTTAAAGATGGTTTTACTTGAATGTTCCACCCAATTAACAGAGTCACCAGACTTTTCAAATGCAATAAATCTTGAAGTGTTTGCTCTCAGTTGGAGTTTAAAGTTGATTCACGTACATCCATCTGTTTTCTCTTTAGAGAAGCTCACGACTTTGTACCTTGTAAACTGCGTTTCCCTTACAAGCCTTATAAGTGATACTCATTTAAGGTCCCTTCGCTATTTCTTTCTCTCTGGCTGCACAGCACTGAAGGAATTTTCTGTTATTTCAATGAATATGGTATACCTGTATTTAGATCACACAGGGATCAAACAACTGCCTGCATCTATTGGAATTCAAGGCAAACTTGAAAAGCTAAATCTTGCAAATAGTACTATTGAGTACTTGCCTGAAAGCATTAAGCACCTCTTGAGGCTGAGAATCTTAGATTTAAGGGATTGCAGGGAGCTTCAAACTCTACCGGAGCTACCCCCAAACATCGAAGACCTAAATGTTGAAGCCTGCATATCACTGAAGACCGTGTTGTTCCCTGTGACTGTAGCTGAACAAATGAAGGAAGAAAGGAAAAAGGTTGCATTCTGGAATTGTGTGGCATTGGATCAACACTCTCTTGAGGCTATTGGCTTGAATGCGCAACTCAACATCATGAAACATTTGTCCAGATTTGAAAGTGACAGTTACCAAGATTATGATGCTCATGAAGCCACAGCCAGCTTTGTGTATCCGGGAAGCAGAATTCCGAAGTGGTTGTTGCACAGAACAATTGGCGATCACATAACAATTGATGTCCCATTTGGTCTGCCTTCCAATCAGTTAGACTTCATTTTTGCCTTCATTGTTCCGAGAGTTGCATCTGAGGGTTTGTTTTTAAACTTTAGCCTCAGTGTTGGTGATGATGAGGATGAAGGGAAGAGTATCAAGTTGCGCTTGTCTAGGCCAGCTCAAGAAATTGCATCGGACCACGTGTATCTGATGTATGACGTGGCATGCTCTAACTACCTAAGTAGTAAAGCCAAATCTCAGGCACAGTTTAAAATTAAGGTTAGTGTGGCATCAGAGTACACGCCGTTGCTATTGAAAGGATTGGGGGTCAGCCTAATCAATGTGGCAGAATATCAGAGTTTCGTTCAACAAATGAAATGGCTTGACACAACTTCAGATACCATTTTTAATTGGTCAATAACAAGAGAAATGGATTCATATAATTGTGAACCTTCATATCAGAATTGTTCTCTTGAATTTGGGAAATTCTATGGTACGCAGTGCTTATTTCAACAACATGTGCACGCGCTTGGAGCAGGCCGAGGAAGGGATATGTTAGAGATAGTTTTGATTAAGGAGTAA 6156 0.3892 MDNELEPGDKISQNLLQSIEASLISLVIFSERYAFSRWCLDELAKIMECRTKYGQIVIPVFYKVHPYDVRHQKGTLTNAFHAYEKYIGEENVQRWRSASKELTTLPGFVSSTFRNDDELIEKIIQHVNNRLKRMRQVYSRALVGIGKSIARVEFLLREEPENVRVIGIWGMGGIGKTTIAEEVYNLLCDEYESVVFLGNVREESLRHGIIYLKSELFSKLLGENLEIYTQNGLPTYVEKRIGHMKVLIVLDDVAESEQLKILVGNPQWFGSGSRIIVTSRDRQVLANYASDNAVYKVEPLDFDEALQLFNLIAFQQNQVEKYRVLAERVVNYAKGIPLVLKTLGHLLHGKDKRIWERELERLGKISNKKVFDMMRLSYDDLDRQEKSIFLDIACFFDGIKLEVNYLKTLLKDGEYQVHAALKRLEDLAFITISKEDVVTMQYIIQEMAWEIVHQESVEEPGKHSRLWNPDDIYHVLKYNQGTEAIRSISLNYSETTTQDIQLSPWVFSKMNNLQFLDFYGKHDLIRLPQGLQSLPTGIRYLRWTYYPLKSLPDKFSAKNLVILELPYSQVEELWHGVQNLVALKVLKVPYSSQLKEIPDLSKATNLEVMDLKYCIHLTGMHPSVFSLNKLEILDLSWCTSLTNLQSSTHMISLRYLSLSHCKRLKKFSLTSKNMIELDLRHTSIQELPSSIGYQSELEKLHLANSDIKSLPTSIKHLTSLKYLDVSNCKSLETLPKLPISVETLDADNCTSLKTMLFPIINEQMKENKRRVVFWNCLMLHEQFRNAIALNVHINIVRFAMRHLSVLGQDHVEDSNNHGAHKASYYQTTTDNLTIDLYSTPYAPNSSYVLCFVVPKVPSEGFMLLFSISDNEGESVEVSLDRSPSVISSDHVCLIYDQRCANFLKRKVQTRRMFQINVSAVSISAGLENVTVQLKGFGVHLVNPLEHQIFISQKAYVVFICLLLILKPKGVASSSENTLKIKYDVFVSFRGPDIRRGFLSHLVDALSRKKINGFVDDKIEVGDEIPNSLIRAIEASLISLVIFSPNYSSSHWCLEELAKIVDCREKEGQFVLPVFLDVDPSDVRHQRGSYEDAFVKHEKKYDLVKVQRWRTTLQRAANLSGLHSTKYRNDYGLLEAIIKHLIKRLNHEQKYISRGLIGIGKSIALLESELNPELGDVRALGIWGMGGLGKTTLAWEVFNSVRSQYEGSCFLRNLRESSAREGIFSLKSKLYSELIGEPGLKIDSSNGLPPFLEKRLGRMKVIIVLDDVNDFRQLKILFGAREQFGSGSRIIVTSRDKQVLHTEVDFIYQVKPLQVDEALRLFNSIAFKHEHRDLEMEFREQSKKVIEYAKGVPLVLEVLGHHVHGKGKEIWESLLDKLKNMPDKEVHNVMKLSYDDLDRDEKKIFLDIACFFKWLTVTEDDIKLLLKDEINSVAFVLERLKDKGLITVSERTVSMHDIIQETAYEIVRQESIEDPGKRSRLWSFNDIYQVLKGDKGSEAIRSISAKLPLLNKKLQLSPQVFAKMSNLQFLDFLAPYTCPSYFPQEPMSLYFPQGLESLPNELRVLLWVHYPMEALPTQFSAENLQILFLPVNRVKKLWHQEQNLQSLKMVLLECSTQLTESPDFSNAINLEVFALSWSLKLIHVHPSVFSLEKLTTLYLVNCVSLTSLISDTHLRSLRYFFLSGCTALKEFSVISMNMVYLYLDHTGIKQLPASIGIQGKLEKLNLANSTIEYLPESIKHLLRLRILDLRDCRELQTLPELPPNIEDLNVEACISLKTVLFPVTVAEQMKEERKKVAFWNCVALDQHSLEAIGLNAQLNIMKHLSRFESDSYQDYDAHEATASFVYPGSRIPKWLLHRTIGDHITIDVPFGLPSNQLDFIFAFIVPRVASEGLFLNFSLSVGDDEDEGKSIKLRLSRPAQEIASDHVYLMYDVACSNYLSSKAKSQAQFKIKVSVASEYTPLLLKGLGVSLINVAEYQSFVQQMKWLDTTSDTIFNWSITREMDSYNCEPSYQNCSLEFGKFYGTQCLFQQHVHALGAGRGRDMLEIVLIKE* 2052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0506 2051 SUPERFAMILY L domain-like 500 762 - -
Amo09g0506 2051 ProSiteProfiles Stonin homology domain (SHD) profile. 448 605 IPR012320 GO:0006897
Amo09g0506 2051 ProSiteProfiles TIR domain profile. 980 1144 IPR000157 GO:0007165
Amo09g0506 2051 Gene3D - 130 298 IPR027417 -
Amo09g0506 2051 Gene3D - 1143 1305 IPR027417 -
Amo09g0506 2051 Gene3D Ribonuclease Inhibitor 416 773 IPR032675 -
Amo09g0506 2051 Gene3D Ribonuclease Inhibitor 1450 1800 IPR032675 -
Amo09g0506 2051 SUPERFAMILY L domain-like 1508 1776 - -
Amo09g0506 2051 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 98 IPR035897 -
Amo09g0506 2051 Pfam NB-ARC domain 1177 1393 IPR002182 GO:0043531
Amo09g0506 2051 Pfam NB-ARC domain 153 379 IPR002182 GO:0043531
Amo09g0506 2051 SUPERFAMILY Toll/Interleukin receptor TIR domain 972 1120 IPR035897 -
Amo09g0506 2051 SMART till_3 981 1118 IPR000157 GO:0007165
Amo09g0506 2051 SMART till_3 1 105 IPR000157 GO:0007165
Amo09g0506 2051 ProSiteProfiles TIR domain profile. 1 131 IPR000157 GO:0007165
Amo09g0506 2051 PRINTS Disease resistance protein signature 240 254 - -
Amo09g0506 2051 PRINTS Disease resistance protein signature 165 180 - -
Amo09g0506 2051 PRINTS Disease resistance protein signature 333 347 - -
Amo09g0506 2051 PRINTS Disease resistance protein signature 715 731 - -
Amo09g0506 2051 Gene3D - 979 1142 IPR035897 -
Amo09g0506 2051 Gene3D - 1 129 IPR035897 -
Amo09g0506 2051 Gene3D - 300 382 IPR042197 -
Amo09g0506 2051 Gene3D - 1312 1397 IPR042197 -
Amo09g0506 2051 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 955 IPR044974 GO:0006952
Amo09g0506 2051 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 974 1989 IPR044974 GO:0006952
Amo09g0506 2051 SUPERFAMILY "Winged helix" DNA-binding domain 368 477 IPR036390 -
Amo09g0506 2051 Pfam TIR domain 2 136 IPR000157 GO:0007165
Amo09g0506 2051 Pfam TIR domain 981 1149 IPR000157 GO:0007165
Amo09g0506 2051 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 8 955 - -
Amo09g0506 2051 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 974 1989 - -
Amo09g0506 2051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1148 1407 IPR027417 -
Amo09g0506 2051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 392 IPR027417 -
Amo09g0506 2051 SUPERFAMILY "Winged helix" DNA-binding domain 1384 1491 IPR036390 -
Amo09g0506 2051 Pfam Leucine Rich Repeat 559 578 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0506 Amo-Chr9 6451157 6509561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0506 14 735 WRKY Transcription Factor Family AT4G12020 35.095 2.64e-106 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0506 - - ahf:112710431 2152.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1023 19 17536068 17540380 Amo09g0506 09 6451157 6509561 hybridization