Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0493 ATGGACCATTTCGTGAGTTCATTGTTTTTGCAAGATGAAAATGTGCGTGCCGACAATGATCCTTTGGCATGGGAGGACATTGAGGGTTGTCGTGTTTCGGAAAATTATGCCGAGGAAGTGCAGGGTGTTGATAGTAATGTCGATAAATTTTTTAATGACACCTTCTATGACAACTGGGATGAAAGAGCATTTGACGGTATTGATGAGCTTGGGTATATGAATCTGAAAGAAATAACTGCAAGTGAGGTTAGGTTGTTACATTTTCGGGATCAGACTGTTGCATTTTCTTTCTACCAATTGTATTCAAAGATGAACGGTTTTGCTGTTAGAAAGAATAGGATTAGAAGGAATGTCAAAAACGAGGTGACACAACAACAATTTATTTGCTTTTGGGACGGGTTTAGAGATACGGGGCCTGAGAATGATTCCCATCGACGCAAATGCGAGCCAAAGCCTGAGCCTAGATGCGGATGTCTGGCTGAAATGCGTGTTCATGTACATGTCGAAAGTGGTAGATGGATCACTTCGAGGAAAATGTGGGCAACTGCTTACATTCACGGGCATTTCTTTGGTGGGTTTCGAACAACATCAAGGTGTGAGAGATTGCATTCTATGCTCAGTAAATTCGTGCACTCTCGACATAACTTGAGAGGCTTTATTGAACAGATCTTGCGATGTATATGTCAAATGAGGTTAAGGGAAGCACAAAGTGAGTTGGCATCTGTTGTTGGGGATTTAGTGTTGCAAAGTCCACTACATGCATTGGAAAGATCTGCCGCCAACACACTGACAAGAGAGATTTTCATGTTATTCAGGCCAATGTTGACAAGAGCTTGTACGCTAAAGGTGTGTTCATGTACATTGACACCAAGTTGTGAGATTTATACACTATCCAAGTCAGGAAATCCTAATAAAGAATGGAACGTGTCTCACTATCAGGACAGATCAATATTTAAGTGCTCTTGCTTCAGGATGGAATCACTTGGCATACCTTGTGATCATATCGTGGCAGTTCTAGTACATCTTGATGCGAAAGAGATACCAAAGAGTCTTCTTATAGATCGATGGTCGAAAAATGCTCGGTTAAAAGTGTGGGAATTTATGGAAAATGGACCCTTTTGTTGGGAATCTTGA 1134 0.4118 MDHFVSSLFLQDENVRADNDPLAWEDIEGCRVSENYAEEVQGVDSNVDKFFNDTFYDNWDERAFDGIDELGYMNLKEITASEVRLLHFRDQTVAFSFYQLYSKMNGFAVRKNRIRRNVKNEVTQQQFICFWDGFRDTGPENDSHRRKCEPKPEPRCGCLAEMRVHVHVESGRWITSRKMWATAYIHGHFFGGFRTTSRCERLHSMLSKFVHSRHNLRGFIEQILRCICQMRLREAQSELASVVGDLVLQSPLHALERSAANTLTREIFMLFRPMLTRACTLKVCSCTLTPSCEIYTLSKSGNPNKEWNVSHYQDRSIFKCSCFRMESLGIPCDHIVAVLVHLDAKEIPKSLLIDRWSKNARLKVWEFMENGPFCWES* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0493 377 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 176 363 IPR031052 GO:0006355
Amo09g0493 377 Pfam FAR1 DNA-binding domain 96 175 IPR004330 -
Amo09g0493 377 PANTHER OS04G0354200 PROTEIN 176 363 - -
Amo09g0493 377 ProSiteProfiles Zinc finger SWIM-type profile. 307 343 IPR007527 GO:0008270
Amo09g0493 377 PANTHER OS04G0354200 PROTEIN 87 174 - -
Amo09g0493 377 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 87 174 IPR031052 GO:0006355
Amo09g0493 377 SMART 26again6 318 345 IPR006564 GO:0008270
Amo09g0493 377 Pfam SWIM zinc finger 320 342 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0493 Amo-Chr9 6305303 6308734 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo09g0493 FAR1 4.4e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0493 - - adu:107464713 422.165