Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0484 ATGGGAAGGAGTCCTTGCTGTTCTAAGGAAGGTTTGAACAAAGGAGCATGGACTGCTATGGAAGACAAAATTCTCACAGACTACATTAAGATTCATGGTGAAGGAAAATGGAGACACTTACCCAAAAGAGCAGGGCTTAAGAGATGCGGAAAAAGTTGCAGGCTGAGATGGTTGAATTATCTAAGACCTGGCATTAAAAGAGGAAATATTACTCACGATGAAGAAGAGCTTATAATCCGCCTTCACAACCTTCTCGGAAACAGGTGGTCCTTGATTGCTGGGAGGCTTCCAGGACGAACAGACAATGAAATCAAGAACTATTGGAATACCAACATTGGAAGAAAGCTTCAAAATGGTACCCAAAATTGCTCATCATCAAACTTGCTCCAACTGGATCCGAACCCGAATCCGAAAACCCGAGAATGGCCATGCCCTAATAATTACCTACAAAATAATATTGGTTCTTGTTTGGTCCAGACTAAAGCCACAAGATGGCCTAATAATAATAAGGTCATACTCACCAAAGAAATTATCACAAAACAAAATAATGAAGGCATGGTTCATAATCATCACATTAATAATAATGGAAATAATCTTTATTCGGAGCTTCTCAAGATGGACTTTGCAGAAGCATCATCATGTTTGGAAAATAACATGTTGGAAGGAATAGGGCAGTTATATCCAAAATTATCATTCAATGACACCCATTTCCATTGGCCTTGGAGTGATTCATTGTATGATACGGATTTTGATTTTCAACACATGGAAAATATTATAGAGTCTGGATTTGATTGGCTTTGA 801 0.3845 MGRSPCCSKEGLNKGAWTAMEDKILTDYIKIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPGIKRGNITHDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGRKLQNGTQNCSSSNLLQLDPNPNPKTREWPCPNNYLQNNIGSCLVQTKATRWPNNNKVILTKEIITKQNNEGMVHNHHINNNGNNLYSELLKMDFAEASSCLENNMLEGIGQLYPKLSFNDTHFHWPWSDSLYDTDFDFQHMENIIESGFDWL* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0484 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo09g0484 266 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo09g0484 266 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo09g0484 266 CDD SANT 16 61 IPR001005 -
Amo09g0484 266 SMART sant 13 63 IPR001005 -
Amo09g0484 266 SMART sant 66 114 IPR001005 -
Amo09g0484 266 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 202 - -
Amo09g0484 266 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Amo09g0484 266 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo09g0484 266 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Amo09g0484 266 Gene3D - 14 66 - -
Amo09g0484 266 CDD SANT 71 112 IPR001005 -
Amo09g0484 266 Gene3D - 69 131 - -
Amo09g0484 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo09g0484 266 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0484 Amo-Chr9 6179989 6184098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0484 1 116 MYB Transcription Factor Family AT2G16720 77.586 3.75e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo09g0484 Myb_DNA-binding 8.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0484 K09422 - gmx:100809225 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0613 19 9458529 9465364 Amo09g0484 09 6179989 6184098 hybridization