Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0481 ATGAGCAACTGGTTGGGGTTTTCTCTGACTCCACACCTGAGGATTGATGAAGAATTTGAGAGACAAAATGAAGAGCGTGGAAATGGAGGATCTTATCCTCCTCCTGTGATGCCTTTGCGCTCTGATGGCTCTCTTTGTGTTGCTGACTCCTTTTCTCGCTCTGCTGCACCTCATGAATGGAGATATGAGAATGCAATGGGAAGTGGAAATTCAAATGAAGAAGGTCCAAAGCTTGAAGACTTCTTAGGATGCTACTCAAATCCATCACCACTTGCGGAAACCAAAGCATTTTGTCAGCAAAACCGAAACCAAAACCAACAAAACAACTTCTCAAAGATGAATATGAATGTTGAAACATCATCGTCACTGTTCCAATCATTCAATCCCTACAATGATAGCAGAAGCAACCACAACCATCATCATCATCATCATGCTCTCATAGCGGGCAACGGGGTTTACAAGTCATCATGGTTGGCACAAACTTGTTGCTCATCTTCATCTTCAGCGGAGGCAAATCAAAATAGTAGTAGTAATAATAATAATAATAATGGTGGGTGCAATTTCCAATCTCTGTCACTGACTATGAGTCCGAGCAGTGTTCAACAACAAGAACAAAATGGTGGGGTGGTGGTGGTGAGTGGAATGAACCACCAAGTAGTGCTTCATAATCAACATAATCAGGTTGATGATGACACTCGTAAAAGATCCATTGCTAAATCTCAAGGGAGAGAACCGGTGCCTCGAAAATCTATTGACACTTTTGGCCAGAGAACTTCTCAATACCGTGGTGTTACAAGGCATAGATGGACGGGTAGATATGAGGCCCATTTGTGGGATAATAGTTGCAGAAAGGAAGGACAAACAAGAAAAGGAAGGCAAGTTTACCTTGGTGGTTATGACAAGGAAGAAAAAGCAGCAAGAGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGAACAGACAAGAATTTGTCGCCAATTTGAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCATCTGTGTATAGAGGCGTGACAAGGCACCATCAACATGGAAGGTGGCAAGCTCGTATAGGAAGGGTTGCAGGCAACAAGGACTTGTATCTTGGTACATTTAGTACACAAGAAGAAGCTGCGGAAGCTTATGACATTGCAGCAATCAAGTTCAGGGGAACAAGTGCCGTGACCAATTTCGACATAAGCAGGTATGACGTGAAGAGGATTTGCTCAAGTTCAACCCTAATTGCCGGAGACCTTGCGAAACGGTCTCCTAAAGACTCAGCTCTAGCCACCGCCGAGGACTTCAACTCATCCGGTTCGGCCGCCACACCTTCTCAACCAACTCCACTGGCAATAACTGATGGTGAACAACACTCTGATGAGTTGTCCAACATGGTGTGGAATGGCAACAGTGACGAGCAACCGCAGAATGAGAGCGGAACCAGCAACAGCAATGTCGCTGGTCCATTGTCGCAGCAGGTTTCGCCAAGCAACAAGAACGAGGCGAACCCGCCGCAAAGCCCCAATGAATTTGGGGTCAGTGGAACAGATTATGGACATGGATATTTCACTCTGCATGGACCACCAAAATATGATGATGGAAACAATGAAAATGAACACAGGATTGGGAATTTGGGTTTGGTTAATCAAGTTCCTATGTTTGCTTTGTGGAATGAATGA 1743 0.4441 MSNWLGFSLTPHLRIDEEFERQNEERGNGGSYPPPVMPLRSDGSLCVADSFSRSAAPHEWRYENAMGSGNSNEEGPKLEDFLGCYSNPSPLAETKAFCQQNRNQNQQNNFSKMNMNVETSSSLFQSFNPYNDSRSNHNHHHHHHALIAGNGVYKSSWLAQTCCSSSSSAEANQNSSSNNNNNNGGCNFQSLSLTMSPSSVQQQEQNGGVVVVSGMNHQVVLHNQHNQVDDDTRKRSIAKSQGREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMNRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKDSALATAEDFNSSGSAATPSQPTPLAITDGEQHSDELSNMVWNGNSDEQPQNESGTSNSNVAGPLSQQVSPSNKNEANPPQSPNEFGVSGTDYGHGYFTLHGPPKYDDGNNENEHRIGNLGLVNQVPMFALWNE* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0481 580 MobiDBLite consensus disorder prediction 223 250 - -
Amo09g0481 580 PRINTS Ethylene responsive element binding protein signature 402 422 IPR001471 GO:0003700|GO:0006355
Amo09g0481 580 PRINTS Ethylene responsive element binding protein signature 261 272 IPR001471 GO:0003700|GO:0006355
Amo09g0481 580 MobiDBLite consensus disorder prediction 451 534 - -
Amo09g0481 580 CDD AP2 361 422 IPR001471 GO:0003700|GO:0006355
Amo09g0481 580 SMART rav1_2 362 426 IPR001471 GO:0003700|GO:0006355
Amo09g0481 580 SMART rav1_2 260 332 IPR001471 GO:0003700|GO:0006355
Amo09g0481 580 MobiDBLite consensus disorder prediction 224 246 - -
Amo09g0481 580 SUPERFAMILY DNA-binding domain 361 422 IPR016177 GO:0003677
Amo09g0481 580 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 39 505 - -
Amo09g0481 580 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 39 505 - -
Amo09g0481 580 Pfam AP2 domain 361 412 IPR001471 GO:0003700|GO:0006355
Amo09g0481 580 Pfam AP2 domain 260 318 IPR001471 GO:0003700|GO:0006355
Amo09g0481 580 SUPERFAMILY DNA-binding domain 259 328 IPR016177 GO:0003677
Amo09g0481 580 Gene3D AP2/ERF domain 259 328 IPR036955 GO:0003700|GO:0006355
Amo09g0481 580 Gene3D AP2/ERF domain 362 422 IPR036955 GO:0003700|GO:0006355
Amo09g0481 580 ProSiteProfiles AP2/ERF domain profile. 362 420 IPR001471 GO:0003700|GO:0006355
Amo09g0481 580 ProSiteProfiles AP2/ERF domain profile. 260 326 IPR001471 GO:0003700|GO:0006355
Amo09g0481 580 CDD AP2 259 328 IPR001471 GO:0003700|GO:0006355
Amo09g0481 580 MobiDBLite consensus disorder prediction 451 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0481 Amo-Chr9 6052557 6058670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0481 1 448 AP2-EREBP Transcription Factor Family AT1G72570 52.268 1.51e-140 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Amo09g0481 AP2 4.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0481 K09285 - gmx:100809762 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1008 19 17123019 17129296 Amo09g0481 09 6052557 6058670 hybridization