Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0478 ATGGCTGACAACACCGACAACCTTGATGAAGTCCCAGCCTTACCTCCCCCTTCACTCGCAGCCAAGCCCACCTTCTCCCGCCGGAGTTCCACCCGCTACAGCTCCCCGTCCGAGGTCACATTCACCGCTGGCGATCCCACGGAGCCGGCCCCTGCCGGCAGCGCGCTACTCCGGCCTCAGCTTTCGCGACGGAACTCCTCCGGCATGGTGTCGGAGCCATTCCGGAAGGGCCGCGTGGTGACGTTCCGGGACAACATGGACGACGAGGAGCAGGACGAGGAGGACGGGTCACGTGCGGATGGCAGCAGGACACTATCAGCAAGAGAGGCGGTTGCGGCACAGGAGGCGGCGGAGGCGGCTGCTGCAGGGGAGGTTGTTGGAGAGGGAGAGGAAGACGAGGGGGCACAGCCGGTGATGATGTCACTGATGGACTTGTTGGAGGAGACTGACAGAGAGATGGGGCTTGAAGGATCGAGGTACATTCTGAGTGATGAAGAGGATTTTGATGAGGACGAGGAAGATGAGGATGGTGATGGTGATGATTTGGAATACACGTGCTCAGTGTGCATGGTGAGGCATAAGGCTAATGCTATCAGCCGCTGTGGCCACTCATACTGCAGGATGTGCTCTAGGGAACTCATGGCTGGCAAAGGCAACTGCCCTCTCTGCAACAATTTCGTTGTTGAGATTCTTGACATCTTTTGA 705 0.5858 MADNTDNLDEVPALPPPSLAAKPTFSRRSSTRYSSPSEVTFTAGDPTEPAPAGSALLRPQLSRRNSSGMVSEPFRKGRVVTFRDNMDDEEQDEEDGSRADGSRTLSAREAVAAQEAAEAAAAGEVVGEGEEDEGAQPVMMSLMDLLEETDREMGLEGSRYILSDEEDFDEDEEDEDGDGDDLEYTCSVCMVRHKANAISRCGHSYCRMCSRELMAGKGNCPLCNNFVVEILDIF* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0478 234 SUPERFAMILY RING/U-box 185 230 - -
Amo09g0478 234 Pfam Zinc finger, C3HC4 type (RING finger) 184 226 - -
Amo09g0478 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 234 IPR013083 -
Amo09g0478 234 SMART ring_2 186 223 IPR001841 -
Amo09g0478 234 PANTHER OS01G0917900 PROTEIN 20 234 - -
Amo09g0478 234 MobiDBLite consensus disorder prediction 23 42 - -
Amo09g0478 234 ProSiteProfiles Zinc finger RING-type profile. 186 224 IPR001841 -
Amo09g0478 234 CDD RING-HC 186 223 - -
Amo09g0478 234 PANTHER OS01G0917900 PROTEIN 20 234 - -
Amo09g0478 234 MobiDBLite consensus disorder prediction 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0478 Amo-Chr9 5995722 5996426 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0478 6 234 C3H Transcription Factor Family AT3G07120 34.400 5.34e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0478 - - aip:110271552 225.328