Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0466 ATGAACATGGAACCAAACCCAACACAAGATGCTCTTGACTGGCAGCTAGAAGGTTCTGCCTCTTTCTTCCCACCATTCTTGGATTATCCATATCCCATTCAAGATTATCASTTCTGGGATCAAAACCAAGACATAATCTGCTACCATAACCAAATTGATGCCGGTACCGGATCCCCGAATGCCGCAAACGGCGCTGCCGCCGTGGTGGCCACCACTGCCACCAGTACAACCTGCACAACACCCTCGGATCCTGAACCTTACAGTTACAACAACCTACCAGTTTCAGACTTGCCGACGAAGAAACGAAACTCCAGCGACAATGATTGCTCGGTCCAAAAGCCTTCACAGAGCCACAGAGCGAAGAAATTCAAGGCTCGTTCAACTAATGAAGTTGACAATGGCGATTCAGTTGCCGAAGGGACTAGTGTTAGAAAATCTGGTGGGAACAAAAAAGGTGGAGGCAAGAACAATGGCAATAACTGCAACAATGGAAACAAGGAAGGTAGGTGGGCGGAACAGTTGCTCATCCCTTGTGCTTTAGCTATAAATGCTAAAAATTTAAATCGTGTACAGCACCTCTTGTATGTGCTCCATGAGCTAGCCTCCCCTACGGGCGATGCGAATCACCGACTCGCGGCACACGGACTCAGCGCACTSACACACCATCTATCCTCATCGTATTCGTCTTCTTCATCTTCTTCTACCATAACAAACGATTCAGGGACTAAGACTTTTGCATCAGTGGACTCCAGATTCTTCCATAAGACACTCCTCAAGTTCTATGAGGTTAGCCCRTGGTTTTCTTTTCCTAARAACATTGCAAACGCTTCAATCCTTCAATTCCTTTCCGAAGAAGAATCAAGTAGTTCGCGTACTCTTCACATCCTTGACATTGGAGTCTCCCATGGTGTCCAATGGCCTACTTTTCTTGAGGCGTTAACCCGAAGACCTGGCGGACCTCCTCCTCTGGTTCGCCTAACCGTTGTAACCGCTTCCTCCAATGAAAATGAACAGAACATGGAAACTCCTTTCTCTGTAGGTCCACCCGGTGATAACTTCTCTTCTTACCTCCTTGGTTATGCTCAAACCATTAAGCTCAATCTGCAGATAAACAGGATTGATAATCTTGAATTACAGACTCTGAATTCGAAGAGTATCGACACATCTTCGGATGAAACATTCATTGTCTGTGCGCAGTTTAGGCTCCACCACTTGAATCATAGAAATCCTGACGAGAGGAGCGAGTTTCTGAAGGCTTTGAGAAGCATGGAGCCTAAAGGAGTGATACTAAGTGATAACAACGTTGAATGCAGTTGCAATGGCTGTGGAAACTTCGCGTCCGGATTCTCCCGGAGAGTGGAGTACTTGTGGAGTTTCTTGGATTCCACGAGTGTTGCGTTCAAGGGCCGGGAGAGTGACGAAAGGAGAGTGATGGAAGGCGAGGCGGCGAAGGCCCTGACCAACCAGAGAGAGATGAATGAAGGGAAAGAGAAATGGTGTGAGAGAATGAAGGAGGCAGGGTTTGTAGGAGGAATGCTTGGAGAGGATACCATTGATGGAGCTAGAGCTTTGTTAAGGAAATATGATAGTAATTGGGAGATGAAAGTTGAGGAGGATAACAAGTGTGTTGGACTATTCTGGAAGGGACAGGCTGTTTCTTTCTGTTCTGTGTGGAAGTTGGATGGGGGAGAAAAACAAGGTAGATCAAGTTCTACATTGAATTCGCGTCTATAG 1734 0.4637 MNMEPNPTQDALDWQLEGSASFFPPFLDYPYPIQDYXFWDQNQDIICYHNQIDAGTGSPNAANGAAAVVATTATSTTCTTPSDPEPYSYNNLPVSDLPTKKRNSSDNDCSVQKPSQSHRAKKFKARSTNEVDNGDSVAEGTSVRKSGGNKKGGGKNNGNNCNNGNKEGRWAEQLLIPCALAINAKNLNRVQHLLYVLHELASPTGDANHRLAAHGLSALTHHLSSSYSSSSSSSTITNDSGTKTFASVDSRFFHKTLLKFYEVSPWFSFPKNIANASILQFLSEEESSSSRTLHILDIGVSHGVQWPTFLEALTRRPGGPPPLVRLTVVTASSNENEQNMETPFSVGPPGDNFSSYLLGYAQTIKLNLQINRIDNLELQTLNSKSIDTSSDETFIVCAQFRLHHLNHRNPDERSEFLKALRSMEPKGVILSDNNVECSCNGCGNFASGFSRRVEYLWSFLDSTSVAFKGRESDERRVMEGEAAKALTNQREMNEGKEKWCERMKEAGFVGGMLGEDTIDGARALLRKYDSNWEMKVEEDNKCVGLFWKGQAVSFCSVWKLDGGEKQGRSSSTLNSRL* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0466 577 MobiDBLite consensus disorder prediction 76 166 - -
Amo09g0466 577 Pfam GRAS domain family 172 559 IPR005202 -
Amo09g0466 577 MobiDBLite consensus disorder prediction 76 100 - -
Amo09g0466 577 MobiDBLite consensus disorder prediction 152 166 - -
Amo09g0466 577 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 4 559 IPR005202 -
Amo09g0466 577 ProSiteProfiles GRAS family profile. 162 559 IPR005202 -
Amo09g0466 577 PANTHER NODULATION-SIGNALING PATHWAY 1 PROTEIN-LIKE 4 559 IPR030015 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0466 Amo-Chr9 5780264 5782417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0466 5 559 GRAS Transcription Factor Family AT3G13840 48.399 1.01e-163 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo09g0466 GRAS 7.1e-76 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0466 - - aip:107615113 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0972 19 16310747 16312848 Amo09g0466 09 5780264 5782417 hybridization
Amo09g0466 09 5780264 5782417 Amo18g0350 18 4690232 4691629 PCT