Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0462 ATGATTGTAGATCTTTCCTTCAAAACGAAAGTACTGTTTTGGGGTGGAATTGTTCTTGGTTCAGTATCAATTGGGATTCTTGGCTATTCAGTCGCTAGAAACTGGAATAAGTGGATGCAATGGAAAGAACAGCGGCAGCGCCAGCAACAAAGGCAAGCAGTTATTGATGAAGTTGATCCTCAAGTGGATGAGCAGAATGAAGATATTGCAGATGGACAGTTGTGTGTCATATGCCTGATGAGGAGAAGGCGCTCTGTTTTCATCCCCTGTGGGCACCTTGTGTGTTGCCAAGGATGTGCCATATCGGTGGAACGCGAAGTGGCACCCAAGTGTCCTGTTTGTCGACAGGAGATTCGGGAGTCAGTTCGGATTTTTGAATCCTGA 384 0.4609 MIVDLSFKTKVLFWGGIVLGSVSIGILGYSVARNWNKWMQWKEQRQRQQQRQAVIDEVDPQVDEQNEDIADGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEREVAPKCPVCRQEIRESVRIFES* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0462 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 127 IPR013083 -
Amo09g0462 127 ProSiteProfiles Zinc finger RING-type profile. 75 115 IPR001841 -
Amo09g0462 127 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 127 IPR044247 GO:0004842
Amo09g0462 127 SUPERFAMILY RING/U-box 62 121 - -
Amo09g0462 127 Pfam Zinc finger, C3HC4 type (RING finger) 73 120 - -
Amo09g0462 127 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 127 - -
Amo09g0462 127 SMART ring_2 75 114 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0462 Amo-Chr9 5702379 5703966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0462 67 124 C3H Transcription Factor Family AT3G06140 37.931 1.39e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0462 K15688 - lja:Lj3g3v2579350.1 202.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0970 19 16276883 16278470 Amo09g0462 09 5702379 5703966 hybridization