Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0447 ATGGAGCAAGCTGAATTGGATACCTCAAAACTACCGAGTTTTCCTCCTTACCGCCGATCACACTTACGCAGCGAAACATACCTCACTCTTACTCGAATTTTCTCTCATCTTCCTGCCACACCTGATAATGGCAACGGTAGAAAGAAGCCAGAAAAAAAGGAAAAGGGACCCGGGTTCCCTGAATCTGTTGGTTCTGATTTTATACATCCCAAGAATGCTGTCCCGATTGAAAGCATACAGGAGTTTGACAAGACTGTTGAAGGGACTGGAAACAAGGGCAGGGTGTGTGTTGTCAATGATATTGTTTTGGGTGATATAGAGGAGATGATGGGAATAGAGGAAGTTGAGGATACTTCGAGGACTCTGCTGCAGGACAGGTGTAACGATGCAGATAAAGAGCAACAAAGGATAATGGATGAGTTGGAACTGGTTGTGAATGAAACCCAAAATATCATTTGTGATAGTGGTTTAATCTCTTTGAGTGCTGGGTCAGGTGAGGAACAGAATGGCAGCAATGCAGCTGAGATGCAAGTACAAGGCTCAACGGATTCTCTTCCAAATTCTAAAGAAGCTGAAGTTGAGAAGGTAGAGCTGGATTATGAAGATGAAAGGCTGCTGGATTATGATAATTTGGAAGATAAATGTAAAATGAAAAATGAAAGAAATTTAGAAAAGTCAACTTGTGTAAACAATGCATCAATTTCTTCAAATATTCAGATTGAAAATGAGGACATAGAAGAGGGAGAGCTTGTTGGAGACCTTGGAGTGGATTGTAATTCATTTGACATGCCTACTGCAGATTCCTTTATTCCTCAAACAAACATTGATGAGGTTCAGAACCCCGAAAGTATTAATATGGGGAATACAGAAAAAGAAGGTTTAGGCAAAGAAATAGGTAGTAAACTGGTTACTGACGTGCCAATAAATTATGTTCAAAATCCAGTCTTGCACAAATCCATATTGGAAGAGGACTCTGACCAAGATCATGGAAACCCTGCTGCATCAGAGATGGTTGATGTCAGCTGTAAAAAAAAGCGTGGCCCTGGTTCTGCAGAAAAGAAAGCGAAAAAGAAGAAAAAAGAGCGGAAAAAACGGGCAAAAAAGAACAAACAACTTGGTGTTAAAAGGTTGAAGTTGTCTCTAGTACAACAGAAACCAAAAACCATCTCTTATTGTCGCCATTTTCTTGTTGGAAGATGCTATGAGGGTGACAAGTGCCATTTTTCACATGATACAGTGCCTTCTACCAAATCAAAGCCATGCTCCTTTTTCGCTCGTCACTCCTGCATGAAAGGGGATGACTGCCCTTTTGATCATCAACTCTCCAAGTATCCTTGTGTTAACTTTGTGTCCGGAGGTTTTTGTGTCAGAGGTGATGCATGCTTGTTTTCGCACCAGTCACCAGCCAAGGAAGATTTTGCTCCAGCTTCAAGTGTGCACAACCCAGGAATGAAATCTCCACACTTTTCAGGAAACACAAATTCCAACATGCCACCTAACATTCTTGGCTGTAGTTCTATCCAACAAAACCATTTGATCAATCCTCCAAGAGTTCATTCTGATATCAATTCGGAACATAAAGCGACAAACACTGTACAGAAACAGCTTAAGCTTGCATCTAAAGGAGTTAGCTTCGTCGATGTTGCAAAGCTATCGTTGCCTTCTCCTACTACGCCAAAGGAAGGCACGACCAAAGTTGGCTCATCCTCTTCTGACCAACGTACATCTGGAACAAATCAAACCTTGGTTGAAATTCCAAAGAAATTGCCAGCTAGGATTCCAAAGGGAATTAAATTTCTTGCTTTTGGGAAAGATGCTGTGTGCAGTTTTAAGAGTTCTGTCAACTCCCTTGTAATTGGGGAAAATAGTATTGATTTTCTCCAGAATATAAGTTTCAGTTTGCTTGATCATACTAGTTCATCCTTAAAAGATGCAACAAAAGGAAGGGTACCACCGACTGATTTAGTCTCCAGTGAGATTTCTGGTAAAAATCAATCCGTGGCAGAAAGTATAAAATCGAGTTTTCCAGGAAAAGCTTCAATGAATGATGCTTCAACTGGTTTACAAGGTAGCTCTCATGTGGATGACAACGGAAGCAAACCAGTCCAAGAGGCAAGTGGGGCATCTGATTCTTTTCAAATTTCCGCAGCAACACCGTCGCCATTTATGCGTCTGGGTTCTCCTTCATCTTCAGAACAGCTACTATCTAGAAAGGAGCTCTTGTCGACTGTATTGTCATTTGCAGCAGAGCATGAATCAGTTATCAAGATGAAAGATTCTGCTGGCACTTCAACTGCATAA 2301 0.4116 MEQAELDTSKLPSFPPYRRSHLRSETYLTLTRIFSHLPATPDNGNGRKKPEKKEKGPGFPESVGSDFIHPKNAVPIESIQEFDKTVEGTGNKGRVCVVNDIVLGDIEEMMGIEEVEDTSRTLLQDRCNDADKEQQRIMDELELVVNETQNIICDSGLISLSAGSGEEQNGSNAAEMQVQGSTDSLPNSKEAEVEKVELDYEDERLLDYDNLEDKCKMKNERNLEKSTCVNNASISSNIQIENEDIEEGELVGDLGVDCNSFDMPTADSFIPQTNIDEVQNPESINMGNTEKEGLGKEIGSKLVTDVPINYVQNPVLHKSILEEDSDQDHGNPAASEMVDVSCKKKRGPGSAEKKAKKKKKERKKRAKKNKQLGVKRLKLSLVQQKPKTISYCRHFLVGRCYEGDKCHFSHDTVPSTKSKPCSFFARHSCMKGDDCPFDHQLSKYPCVNFVSGGFCVRGDACLFSHQSPAKEDFAPASSVHNPGMKSPHFSGNTNSNMPPNILGCSSIQQNHLINPPRVHSDINSEHKATNTVQKQLKLASKGVSFVDVAKLSLPSPTTPKEGTTKVGSSSSDQRTSGTNQTLVEIPKKLPARIPKGIKFLAFGKDAVCSFKSSVNSLVIGENSIDFLQNISFSLLDHTSSSLKDATKGRVPPTDLVSSEISGKNQSVAESIKSSFPGKASMNDASTGLQGSSHVDDNGSKPVQEASGASDSFQISAATPSPFMRLGSPSSSEQLLSRKELLSTVLSFAAEHESVIKMKDSAGTSTA* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0447 766 PANTHER PROTEIN SUPPRESSOR OF SABLE 165 610 - -
Amo09g0447 766 MobiDBLite consensus disorder prediction 36 67 - -
Amo09g0447 766 Pfam CCCH-type zinc finger 392 411 IPR041367 -
Amo09g0447 766 MobiDBLite consensus disorder prediction 642 662 - -
Amo09g0447 766 ProSiteProfiles Zinc finger C3H1-type profile. 386 413 IPR000571 GO:0046872
Amo09g0447 766 MobiDBLite consensus disorder prediction 349 370 - -
Amo09g0447 766 MobiDBLite consensus disorder prediction 323 370 - -
Amo09g0447 766 ProSiteProfiles Zinc finger C3H1-type profile. 445 468 IPR000571 GO:0046872
Amo09g0447 766 MobiDBLite consensus disorder prediction 45 59 - -
Amo09g0447 766 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 165 610 IPR045124 GO:0003723|GO:0045892
Amo09g0447 766 MobiDBLite consensus disorder prediction 675 710 - -
Amo09g0447 766 MobiDBLite consensus disorder prediction 554 581 - -
Amo09g0447 766 Coils Coil 350 370 - -
Amo09g0447 766 SMART c3hfinal6 387 412 IPR000571 GO:0046872
Amo09g0447 766 SMART c3hfinal6 443 467 IPR000571 GO:0046872
Amo09g0447 766 SMART c3hfinal6 415 441 IPR000571 GO:0046872
Amo09g0447 766 Gene3D - 379 443 - -
Amo09g0447 766 MobiDBLite consensus disorder prediction 163 187 - -
Amo09g0447 766 MobiDBLite consensus disorder prediction 556 581 - -
Amo09g0447 766 MobiDBLite consensus disorder prediction 163 190 - -
Amo09g0447 766 ProSiteProfiles Zinc finger C3H1-type profile. 415 442 IPR000571 GO:0046872
Amo09g0447 766 SUPERFAMILY CCCH zinc finger 444 467 IPR036855 GO:0046872
Amo09g0447 766 SUPERFAMILY CCCH zinc finger 386 411 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0447 Amo-Chr9 5299720 5304326 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo09g0447 zf-CCCH_4 2.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0447 - - adu:107464618 1476.46