Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0434 ATGCTAGAAGGGAAGGTACCATTGGAGGGTGTATTCAAGGATGCAACTGCAATTTCAATTGTTGGTAATAATAAGCTTTGTGGAGGTGTCTTACAGTTACATCTTGCACCATGCCCTGCCAATGTTATGGCAAGAAGCAATCACCATAATTTGAAGCTAGGCATAATTGTTATTTGTGTGGTTGTATGCCTTATTTTGCTTTCAATTGTTGTTTTCTTGAGCAAGAAGAAAAAAAGAACATCATCTTTGACAGCATCAACAAATCAGTTATCAATGGTGTCATACCAAATCCTACATCATTCAACACAGGGGTTTTCTACCAGTAACTTGATTGGATCTGGTAGCTTTGGTTCCGTGTACAAAGGATTCCTTGAATCCGAACACAAGTTTGTCGCCATAAAGGTGATAAACCTTCAAATGAGTGGAGCTCACAAGAGTTTCATTGCTGAATGTAATGCTCTAAAATTTATCAGGCATCGAAATCTGGTGAAGATTTTAACATGTTGCTCGAGCATAGATTATAGTGGCCAAGAATTTAAAGCATTAGTGTTTGAGTACATGCCTAATGGAAGCTTAGAAAAGTGGTTGCATCCTAGTGCTGAAATCACAGATAGGCTATATACATTAGACCTTACTCAAAGACTAAATATTGTTGTTGATGTGGCTTCTGCATTACATTATCTTCACTATGGATGTGAACAACCTGTTGTTCATTGTGATCTAAAGCCAGAGAATGTGCTTCTTGATGATGACATGGTTGCTCATGTGACTGATTTTGGATTAGCAAGGCTTCTCTCAGTGACTAATGGTGATCCTCATAACCAATCTAGCACAACTGTGTTCAAGGGAACTATTGGATATGCTCCTCCAGAGTATGGAATGAGTTGTGAGGTGTCGATGCAAGGTGATGTGTATTCTTTTGGAATTCTAGTATTGGAAATGGTAACTGGAAGGAGGCCAATGGAAGAAATGTTTAAAGATGATAACAATCTTCATAACTATGTGAAGATGGCATACTCACACAATCTTCTAGAGATTATGGACTCAACTCTTTTGCCAAAACAAACAGGAAAAGAAGAAAAATACACAAAGAAGCTAACCATGTGTGTATTTTCTCTAATTAGAATTGGACTTGCTTGTTCAGTTGAATCCCCGAATGAAAGAATGAACATGGCAGATGTCACTAGGGAGCTAAACCTTACCAAAGATGTGTTTCTTCAAGATTGA 1227 0.379 MLEGKVPLEGVFKDATAISIVGNNKLCGGVLQLHLAPCPANVMARSNHHNLKLGIIVICVVVCLILLSIVVFLSKKKKRTSSLTASTNQLSMVSYQILHHSTQGFSTSNLIGSGSFGSVYKGFLESEHKFVAIKVINLQMSGAHKSFIAECNALKFIRHRNLVKILTCCSSIDYSGQEFKALVFEYMPNGSLEKWLHPSAEITDRLYTLDLTQRLNIVVDVASALHYLHYGCEQPVVHCDLKPENVLLDDDMVAHVTDFGLARLLSVTNGDPHNQSSTTVFKGTIGYAPPEYGMSCEVSMQGDVYSFGILVLEMVTGRRPMEEMFKDDNNLHNYVKMAYSHNLLEIMDSTLLPKQTGKEEKYTKKLTMCVFSLIRIGLACSVESPNERMNMADVTRELNLTKDVFLQD* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0434 408 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Amo09g0434 408 Pfam Protein kinase domain 106 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g0434 408 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 406 - -
Amo09g0434 408 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 2 406 - -
Amo09g0434 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Amo09g0434 408 ProSiteProfiles Protein kinase domain profile. 105 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g0434 408 SMART serkin_6 105 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g0434 408 Gene3D Transferase(Phosphotransferase) domain 1 187 405 - -
Amo09g0434 408 Gene3D Phosphorylase Kinase; domain 1 68 186 - -
Amo09g0434 408 SUPERFAMILY Protein kinase-like (PK-like) 79 399 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0434 Amo-Chr9 5169125 5170524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0434 2 407 Receptor kinase-like Gene Family AT3G47570 48.333 9.45e-127 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Amo09g0434 Pkinase 6.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0434 - - adu:107464670 791.956