Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0360 ATGGATACTACGCCGGCGAGGTTTAAGTGCAGCTACGGCGGCGAGATCAGGCACCACGACGACGAACACCACCGCTACCCCTACTATGCTGGCGGCATCCACAGGATGCTCCAAGTTCAAGGCGACATAAATTTTGCTGTTATGACCGCCGAGCTCTCCTTACTCTGCGGCGGCGCTGCCGTAACCTCCTTTAAGTACCTTATCCCCGGCGACGACCTCGACACCCTGGTCACCGTCTCCGATGACAGGGACTTCTGTTACCTTATGCGCGAATACGATCTGCACTACCGCGGTTCCGGTTCTCTCGACCCGATGAGGATCTTCCTCGACATCGTCGAACAAGGCGGCGGCGCTGTTGCTCCTCAGGCACCTGCCCCGCTGAGTGCCTCCGACGAGGATCGATGCGTGAACATGGAGCTGGAGGGTCAATTGGAGACGCAGTGGGGGCGCGTGGGAGGTCGCGTTTCGTTTTCTTTTCCCGGGCCGTTGACTCCTGCATCGGCCCTCATACTCTTCGCTCTGATTCTTCTTCTTTCGCTACCAATCGCATTCGTACTTCAAAATTATTTAGTTACGAATGCTGTTGCAGAGTTCAGGGACTTTGAACATCATCGTGACGGGATTATTCACTTTGAGAAGCACATGAATCAATTACCTGGAGCATTGGAGGTTCCCGCTAAGGATACCATTGAAATGGTGTTGCATGATAAAAAGGGTAGCAGAATACATGCTTCTCTCCCAAAGGCATTGGTCAAGAAGTTTTGTCCTGTTGCTAACATCATACAAAACGGCAATATAGATGACAAGGAACTCATTGATATATTTGTTGAGGTGGTTGGTAACAAGGGAAGACAAATTGTCTTTACTTTTGAGGATTTGGACAAAAATAGGGTGACCTGTATTTTGTTTGGAACACTAGTGGATCATATTCTTCCCCACCTTGATTCAATTGGTCCTGGACCACTCATTGTTGCTAAAAGTTTCTTAGACAAGGTGCATGTTCAGAGCAGTTACTATGCATCAAAGCTCCATGTGAACGTCTACATAAAGGAAGTTGTGGATTCCAAAAATAGGTTGGGGAGTACTTGCCAGATTACTTCGCAGTATATAAGTCATCTCTCATCGCAACCTAGCTATTCTGTGAGTGATGAGATTAACGGCGCATTAGTAAGATTGAAGTCAATAGAGGAGCTTCTGAATTGTGCAAATGAGGGTTCTTATTGGATTCTGGCTAGTATAGTGTGTTTGGATGTTGGAAAAGATGATTGGCTTTACAAGGAATGTACCCGATGCCCCCAGAAGCTAGAAGGTGCTGAACCATTTTATTGCAAGAGATGTGATCAAGTGGATTCCAATCCTCTTTTACGGTTTAGGCTTCAAGTTATAGTGTCTGATGGCACGGGAAGTATAACATTGGTTCTGTGGGATAGGGAAGCCATGCAAGTTGTTGGGAAGACAGCAACAGAGATAAAAGAAAACTCATTTGATGATGGTGATGCAGACACTTATCCTAAAGCTCTTGATTCAGTGATAGATACAAAGCTTCTGATTAAGGTTGCTGTGTCATCAAGGAACATTAACGGTTATGATGATGTCTATAATGTTATGAGGATATCCGGTGATGAAGAATTGATTACAAAATTGGGCCATGATGCTGCTGTAAGTGAATTTTTTAGAGGACACAATGCATGTGTGAATCAATTTATTCATTGTCATGATTTTCATTTGTATAGGTAG 1737 0.4525 MDTTPARFKCSYGGEIRHHDDEHHRYPYYAGGIHRMLQVQGDINFAVMTAELSLLCGGAAVTSFKYLIPGDDLDTLVTVSDDRDFCYLMREYDLHYRGSGSLDPMRIFLDIVEQGGGAVAPQAPAPLSASDEDRCVNMELEGQLETQWGRVGGRVSFSFPGPLTPASALILFALILLLSLPIAFVLQNYLVTNAVAEFRDFEHHRDGIIHFEKHMNQLPGALEVPAKDTIEMVLHDKKGSRIHASLPKALVKKFCPVANIIQNGNIDDKELIDIFVEVVGNKGRQIVFTFEDLDKNRVTCILFGTLVDHILPHLDSIGPGPLIVAKSFLDKVHVQSSYYASKLHVNVYIKEVVDSKNRLGSTCQITSQYISHLSSQPSYSVSDEINGALVRLKSIEELLNCANEGSYWILASIVCLDVGKDDWLYKECTRCPQKLEGAEPFYCKRCDQVDSNPLLRFRLQVIVSDGTGSITLVLWDREAMQVVGKTATEIKENSFDDGDADTYPKALDSVIDTKLLIKVAVSSRNINGYDDVYNVMRISGDEELITKLGHDAAVSEFFRGHNACVNQFIHCHDFHLYR* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0360 578 SMART PB1_new 5 112 IPR000270 GO:0005515
Amo09g0360 578 SUPERFAMILY Nucleic acid-binding proteins 393 538 IPR012340 -
Amo09g0360 578 Pfam PB1 domain 28 109 IPR000270 GO:0005515
Amo09g0360 578 SUPERFAMILY CAD & PB1 domains 25 110 - -
Amo09g0360 578 CDD RPA1_DBD_C 392 538 IPR013955 -
Amo09g0360 578 Pfam Replication factor-A C terminal domain 418 529 IPR013955 -
Amo09g0360 578 PANTHER OS05G0427100 PROTEIN-RELATED 6 136 - -
Amo09g0360 578 Gene3D - 381 548 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0360 Amo-Chr9 4146159 4150144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0360 7 116 MAP Kinase Kinase Kinase AT5G57610 38.053 9.94e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0360 - - ahf:112710177 460.299