Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0346 ATGGTTCTTGTACGGATACCCCATTTGAGGTTCTTTCTGTTTCTGCTTCTTCATATTCACTGCATCAGCTGCTACAACACCACAACAACACCATTGGGTTGTACGGACACAGGCCGTGTCTGCACCTCTTTCTTGGCCTTTAAGCCTCAACAGAACCAAAGCTTAGCTGTGATTCAAAGCATGTTTGATGTGTTACCCGGTGACATCACTGTTGAGGATAGTGGTTGGGACTATGTGTTCATAAGGAAGAACTGTTCTTGTGCCTATGGCCTCAGGAAGTATGTGTCTAACACCACTTTTACTGTGAAATCCAATCAAGGGTATGTGTATGATTTGGTTATGGATGCTTATGATGGTCTTGCTTTGCCTCCAAACACAACAAGGAGGGCTAAGAATGGTGCTGTTGTGTCTTTGAGGTTGTTCTGTGGCTGCTCTAGTGGCTTGTGGAACTATCTGATGAGTTATGTTATGAGAGATGGTGACAGTGTTGAATCATTGGCAAGTAGATTTGGGGTTAGTATGGATAACATTGAGAGTGTGAATGGCATTGGTAATCCTGATAATGTCACGGTTGGTTCGGTTTATTATATACCTCTTGATTCAGCTCCGGGTGATCCTTATCCCATTAACAATACTGCTCCTCCAGCTCCTGTTCCCGCCCCATCTGTTGAGAATATCTCAGGTGATCAAGTCGGTCGTAAGGCTCATGTACCTTACGGATGGATCATTGGGGGTTCAGGGGTTGGTCTTTTTATGGTGTTATTAGGCATAGTTCTCTGTGTTTCTCTGAAGTCATCAAATTGTCGCTCTGAAGCCAGAAGTAATGAAAAAGATGCTGAGGGGAAGATATCTCATAAGTTCCATATTCTTAGAAATCCAAGTTTTTTCTGTGGTTCTGGGAGGTATATATGTGGCAAAACTGTAGAACAGAAGCAAACTGATGCCGAATCCAGTAATCACACGATTACCGTTCCCAAAGTTTCAACTCTTGGCCCTGATGTGTTTGACATGGATAAGCCTGTAGTTTTTACATATGAAGAGATTTTCGCCACAACTGACTGTTTCTCTGATTCAAATCTACTTGGTCATGGTACCTATGGTTCTGTTTACTATAGCCTTCTTCGGGATCAGGAAGTTGCTATCAAAAGAATGACTGCTATGAAAACAAAAGAATTCATGTCAGAGATGAAAGTTCTATGCAAGGTCCATCATGCTAATCTGGTAGAATTGATCGGCTATGCAGCTAGTCAGGATGAGCTTTTCCTTGTTTATGAATATGCTCAAAAGGGTTCACTTAGAAGTCATTTGCATGATCCTCAAAATAAGGGTCATTCCCCACTTTCTTGGATCATGAGGGTCCAAATTGCTCTTGATGCCGCTCGGGGACTTGAATATATACATGAACACACTAAGACTCATTATGTCCACCGGGACATCAAGACGAGCAACATTTTGCTCGATGCTTCCTTTAGAGCAAAGATTTCGGATTTCGGGTTAGCAAAACTTGTTGGAAAAACAAATGATGGTGAAGTTTCAACAACCAAAGTTGTTGGTACTTATGGATATCTTGCACCAGAATACTTGAGTGATGGCCTTGCAACAACAAAGAGTGATGTCTATGCATTTGGTGTTGTCCTTTTCGAGATCATATCGGGCAGGGAGGCCATTATTCGAACAGAAGGAACGATGTCCAAAAATCCAGATAGGCGTTCACTGGCTTCTGTGATGTTGGCAGTCCTTAGGAACTCGCCGGATTCCGTGAGCATGTCAAACATGAGAGATTATATTGACCCAAATATGATGGATCTGTATCCCCATGATTGTGTATTTAAGATGGCCATGCTGGCGAAGCAATGCGTGGACGACGATCCGGTCTTACGGCCGGACATGAAACAAGTTGTGATATCTCTCTCACAGATTCTTCTTTCTTCAATTGAATGGGAAGCAACTCTGGCAGGGAATAGCCAAGTATTTAGTGGCCTTGTTCAGGGAAGATAG 1998 0.4274 MVLVRIPHLRFFLFLLLHIHCISCYNTTTTPLGCTDTGRVCTSFLAFKPQQNQSLAVIQSMFDVLPGDITVEDSGWDYVFIRKNCSCAYGLRKYVSNTTFTVKSNQGYVYDLVMDAYDGLALPPNTTRRAKNGAVVSLRLFCGCSSGLWNYLMSYVMRDGDSVESLASRFGVSMDNIESVNGIGNPDNVTVGSVYYIPLDSAPGDPYPINNTAPPAPVPAPSVENISGDQVGRKAHVPYGWIIGGSGVGLFMVLLGIVLCVSLKSSNCRSEARSNEKDAEGKISHKFHILRNPSFFCGSGRYICGKTVEQKQTDAESSNHTITVPKVSTLGPDVFDMDKPVVFTYEEIFATTDCFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTAMKTKEFMSEMKVLCKVHHANLVELIGYAASQDELFLVYEYAQKGSLRSHLHDPQNKGHSPLSWIMRVQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDASFRAKISDFGLAKLVGKTNDGEVSTTKVVGTYGYLAPEYLSDGLATTKSDVYAFGVVLFEIISGREAIIRTEGTMSKNPDRRSLASVMLAVLRNSPDSVSMSNMRDYIDPNMMDLYPHDCVFKMAMLAKQCVDDDPVLRPDMKQVVISLSQILLSSIEWEATLAGNSQVFSGLVQGR* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0346 665 ProSitePatterns Protein kinases ATP-binding region signature. 361 388 IPR017441 GO:0005524
Amo09g0346 665 Pfam LysM domain 155 194 IPR018392 -
Amo09g0346 665 SMART LysM_2 154 198 IPR018392 -
Amo09g0346 665 ProSiteProfiles Protein kinase domain profile. 355 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g0346 665 SMART serkin_6 355 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g0346 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Amo09g0346 665 CDD STKc_IRAK 361 640 - -
Amo09g0346 665 SUPERFAMILY LysM domain 153 198 IPR036779 -
Amo09g0346 665 ProSiteProfiles LysM domain profile. 153 197 IPR018392 -
Amo09g0346 665 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 33 665 IPR044812 GO:0019199|GO:0045087
Amo09g0346 665 Pfam Protein tyrosine and serine/threonine kinase 359 635 IPR001245 GO:0004672|GO:0006468
Amo09g0346 665 Gene3D Phosphorylase Kinase; domain 1 331 426 - -
Amo09g0346 665 Gene3D LysM domain 150 205 IPR036779 -
Amo09g0346 665 PANTHER BNAA06G02020D PROTEIN 33 665 - -
Amo09g0346 665 Gene3D Transferase(Phosphotransferase) domain 1 428 651 - -
Amo09g0346 665 CDD LysM 154 197 IPR018392 -
Amo09g0346 665 SUPERFAMILY Protein kinase-like (PK-like) 333 637 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0346 Amo-Chr9 3958040 3964018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0346 31 665 Receptor kinase-like Gene Family AT1G51940 69.673 0.0 868
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Amo09g0346 PK_Tyr_Ser-Thr 2.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0346 - - gmx:100796989 1133.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0339 19 4359316 4365167 Amo09g0346 09 3958040 3964018 hybridization
Amo19g0339 19 4359316 4365167 Amo09g0346 09 3958040 3964018 PCT
Amo09g0346 09 3958040 3964018 Amo19g0339 19 4359316 4365167 PCT
Amo09g0346 09 3958040 3964018 Amo09g0346 09 3958040 3964018 PCT