Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0317 ATGGCAAATTCTCTTTTTCTACTGCTTGGAGCTCTTTCTTTCATAGCAACGATCCAAGGCCAGGATCAATCAGGATTTATTAGCATAAATTGTGGACTACCTGAAAATTACAGCTACGTTGAGAAGAATACTGGAATCAATTACATTTCAGATGCTAATTTCATTGATTCTGGTGTGAGTAAGACTGTGTCGCCTCAAGATAAGGCTACTCATCAACAATATTTTACTTACCTTCGAAGCTTTCCTTATGGAACAAGAAACTGTTACAGAATAAATAATGTAACCATCAACACTGTATATTTAATCAGAACTAGTTTTTTGTATGGAAACTATGACGGTCTAAATAAGCTCCCACAGTTTGAAGTTCATTTTGGAACTAATTTGTGGGACACATTGAAATTCTCGGATGCATCAGTGAGCATATACAGAGAGCTCGTTTACTCTGCAACAAGGGACTATGTAGATATCTGTCTGGTTAACATAGGCACTGGCACACCATTCATTTCGGCTATAGAATTGAGGATTATTGAGAAGAATAATGGTCCCAGCTCTTACTCAGTTGCACGTCTCAAAGGATTAGACTTGGGCAGCAAGAACAATTCAACATGCAGAACAGCCGCTACACCAAGAAATGCAAGAGATTCTTTGGATTTCTACTTTCAGTTTGATTATGTTGCACAGATACATGTTGTCAGATTCTATTTTGCTGAGGTACAAAAGCTGTCAGCAAATGAAATTAGATCATTCAACATCAGTGTCAATGGCAATTATTGGAAAGGACCCATTGTACCCACATACAATCAAACAGTTTTCTACAATTTTCAGAGTACATATTTTGAAAGAGTTAGTGAATATCGATTCTCACTTCTTCCTACAGAGTTCTCTACCCTTCCTCCTATCACCAACGCTATTGAGATTTTTCTTATTAAGGATTTCTCACAGCCACAAACTCAAAATGATCAAGTTGATGCTATGAGAAATATCAAGATTGCTTATAAGGTGTCAAAAAATTGGCAAGGAGATCCATGTGCCCCTGTAGCATACAAGTGGGACGGTCTAAATTGTAGTTCCGTTGGTACTTTAAAAATCACAGCCTTGAATTTGTCTTCTAGTGGACTAACGGGACAAATTGTATCTTATATCTCCAAGCTTACTGACTTAGAGTCCTTGGATTTATCAAATAATAGCTTAAACGGGGAGATACCTGATTTTCTGGCAGACCTGCCATCACTTAGAGTCCTAAACTTGCATAATAACAACCTCACAGGTCAAGTTCCGAATGCACTCATCCAAAGATCAAGTGAAGGAGCACTATTGCTAAGGTTGGGGCAAAATCCAAATCTGCTATGTGAATCTGCTCTTTGTGACCAACAGACAAAGGATAAAAGCAAGAAAAATAACAGAGTTATTTATGTACTAGCATCTATTTCTGCAATTTTGGTGCTCCTGCTGTTAGTTCTTGCAACAGTTAACATCATTTACATCAAAAAGAGAAAGCCAAAAATTCATAAGGAGTTTAGTGATCAAACTGGATCACAGTTGGAATCTAAGAGAAGACGGTATTCATTCAATGAAGTATCTAACATGACCAATAATTTCGAAAGAGTCCTCGGTAGAGGTGGATTTGGAACAGTTTACTATGGCATTATTGATGACATTCAAGTAGCTGTCAAGATGCTTTCGCAATCATCAGTACAAGGATATCAGCAATTTCTAGCAGAGGTTAATATTTTGATGAGGGTTCATCATAGGAATCTAACTTCCCTCATTGGATATTGCAACGAAGAAACCAACATAGCACTCATCTATGAATATATGGAAAATGGCAACTTAGAAGAACATCTTTTGGAGAAAAATAGCAGGACAAYGTTGTTCAATTGGGAAGAAAGGCTCACTATAGCTATGGATGCAGCCCAAGGACTTGAATATCTACATAACGGTTGTAAGCCACCAATAATCCACAGAGATGTGAAATGTACAAACATTTTACTAAATGAAAATTTCCAAGCGAAAATGTCAGACTTAGGTCTGTCCAGAAGCTTTCCGGTTGACGGCGGCACACATGTAACAACTGTCATTGCGGGGACTCCTGGTTACTTGGATCCAGAGTACCAAGTATCAAATAGGCTAACAGAGAAAAGTGATGTTTATAGTTTTGGGGTAGTTTTATTGGAGATAATCACAGGTAAACCAGCAATACTTAAAGCGGTTGAGGGGAAAATTCACATAAGTGAGTGGGTTAAATCTATGCTTGCAAAAGGTGATGTAAAATGTATTGTTGATACAAGATTACAAGGAGATTTTGAGAGTAGTTCTGTTTGGAGAGCTGTTGAAATAGCAATGGCTTCTGTGTCCAATAAATCCTCCAAAAGACCATACATGACTGATATTGTGACCGAGCTAAAGGAATGTTTGGCTATGGAGTTGGCTCGAAAACATAACAGTTGCGAAACCATGACTATGAGTTTGGCTACAGAGTCAGAAAGCAGCTCCTTGGCTAGTTCCATAATGATGTTTTTTTGGTGTCTAAACAAGGAAAGAAACAAAGCAAAAACTATCCTAAATCCGAGCGGATGA 2577 0.3791 MANSLFLLLGALSFIATIQGQDQSGFISINCGLPENYSYVEKNTGINYISDANFIDSGVSKTVSPQDKATHQQYFTYLRSFPYGTRNCYRINNVTINTVYLIRTSFLYGNYDGLNKLPQFEVHFGTNLWDTLKFSDASVSIYRELVYSATRDYVDICLVNIGTGTPFISAIELRIIEKNNGPSSYSVARLKGLDLGSKNNSTCRTAATPRNARDSLDFYFQFDYVAQIHVVRFYFAEVQKLSANEIRSFNISVNGNYWKGPIVPTYNQTVFYNFQSTYFERVSEYRFSLLPTEFSTLPPITNAIEIFLIKDFSQPQTQNDQVDAMRNIKIAYKVSKNWQGDPCAPVAYKWDGLNCSSVGTLKITALNLSSSGLTGQIVSYISKLTDLESLDLSNNSLNGEIPDFLADLPSLRVLNLHNNNLTGQVPNALIQRSSEGALLLRLGQNPNLLCESALCDQQTKDKSKKNNRVIYVLASISAILVLLLLVLATVNIIYIKKRKPKIHKEFSDQTGSQLESKRRRYSFNEVSNMTNNFERVLGRGGFGTVYYGIIDDIQVAVKMLSQSSVQGYQQFLAEVNILMRVHHRNLTSLIGYCNEETNIALIYEYMENGNLEEHLLEKNSRTXLFNWEERLTIAMDAAQGLEYLHNGCKPPIIHRDVKCTNILLNENFQAKMSDLGLSRSFPVDGGTHVTTVIAGTPGYLDPEYQVSNRLTEKSDVYSFGVVLLEIITGKPAILKAVEGKIHISEWVKSMLAKGDVKCIVDTRLQGDFESSSVWRAVEIAMASVSNKSSKRPYMTDIVTELKECLAMELARKHNSCETMTMSLATESESSSLASSIMMFFWCLNKERNKAKTILNPSG* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0317 858 SMART serkin_6 531 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g0317 858 Pfam Leucine rich repeat 363 421 IPR001611 GO:0005515
Amo09g0317 858 Gene3D Ribonuclease Inhibitor 322 437 IPR032675 -
Amo09g0317 858 PANTHER PUTATIVE-RELATED 204 821 - -
Amo09g0317 858 PANTHER PUTATIVE-RELATED 12 204 - -
Amo09g0317 858 SUPERFAMILY L domain-like 347 431 - -
Amo09g0317 858 PRINTS Leucine-rich repeat signature 408 421 - -
Amo09g0317 858 PRINTS Leucine-rich repeat signature 387 400 - -
Amo09g0317 858 Pfam Malectin-like domain 203 308 IPR024788 -
Amo09g0317 858 Pfam Malectin-like domain 29 179 IPR024788 -
Amo09g0317 858 PANTHER OS07G0107800 PROTEIN-RELATED 204 821 - -
Amo09g0317 858 Pfam Protein tyrosine and serine/threonine kinase 533 800 IPR001245 GO:0004672|GO:0006468
Amo09g0317 858 PANTHER OS07G0107800 PROTEIN-RELATED 12 204 - -
Amo09g0317 858 ProSitePatterns Protein kinases ATP-binding region signature. 537 558 IPR017441 GO:0005524
Amo09g0317 858 ProSiteProfiles Leucine-rich repeat profile. 386 409 IPR001611 GO:0005515
Amo09g0317 858 ProSitePatterns Serine/Threonine protein kinases active-site signature. 652 664 IPR008271 GO:0004672|GO:0006468
Amo09g0317 858 ProSiteProfiles Protein kinase domain profile. 531 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g0317 858 SUPERFAMILY Protein kinase-like (PK-like) 513 801 IPR011009 -
Amo09g0317 858 CDD STKc_IRAK 537 803 - -
Amo09g0317 858 Gene3D Transferase(Phosphotransferase) domain 1 606 846 - -
Amo09g0317 858 Gene3D Phosphorylase Kinase; domain 1 518 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0317 Amo-Chr9 3734817 3740452 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0317 5 831 Receptor kinase-like Gene Family AT1G51880 44.369 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Amo09g0317 PK_Tyr_Ser-Thr 5.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0317 - - ahf:112712814 1602.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0380 19 5002259 5008455 Amo09g0317 09 3734817 3740452 hybridization