Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0316 ATGAGAATGTTAATGCACTTGCTTTTTGTGATGCTTGGGGTTGTAACTAGTGGGCTCCTGGTTCAAACCCAGTTTCAATCAGGATTCATTAGCATAGATTGTGGGCTACCCGAAGGAAAGGACTATACTGAGAAGAGCACAGGAATTAATTACATTTCAGATACTAATTTCATTGATTCAGGTGTGAGCAAAATGGTATCGAGTGAAGATAAGATTACTCACCAACAACAGTTTAGTTACCTGAGGAGCTTTCCCAACGGTATGAGAAACTGTTACAAAATTAGTGTGACAAGTGGCACTAAATATTTAATCAGAGCAAGTTTTCTGTATGGAAACTATGACGGTCTAAATGAGCCTCCACAATTTGATATTCATCTCGGGTCTAATTTGTGGGACACAGTGAAACTAACCAATGCATCACAGAGCAGTTACAGAGAACTGATGCACACTCCCACACTGAATTATGTACACATCTGTCTAGTTAACACAGGCAACGGGATTCCTTTTATTTCTGCCATAGAGTTCAGGAATATGGACTTTAACAATGTTTATAAAACTTCCGGAGCTACAACATTGGCTCGTTTGGCTGGTTTAGATTTTGGTTCATTCACCAACCTAACATACAGGTACATGGATGATTTTCATGATCGTTTATGGGAGCCTTATTCCAACGACCAGTGGGCACAACTACACAACCCTATTAACAATGATCTACCTTCCCGTGATTATGAACTGCCAATTTCAGTAATCTGGACTGCTGCTACACCAAGAAATGCTAATGGTGTCTCCTTAGATTTCTACTTTGATGCACTTAATGAAACTACACAGCAACAGTGCTATTTCTATCTGCACTTTGCTGAGGTTCAAAAGCTGGCACCAAATGAAACTAGAGAATTCAACATCACCCTTAATGGAGAGGACTTTTATAATCTACTTCGACCCGGTCACTTTGTAAATACCATATTTGATCCATCTCCATATAATGTATTCTATAAGAATAATAACATTTCTCTTGTTAAGACAGAAGCTTCTACCCTTCCACCCATCATCAATGCTCTTGAGATTTATCAAGTTAAGGATTTCTCACAATTAGAAACTCAACAAGATGATGTTGATGCTATCACAAATATCAAGAAAGTTTACAGGGTGACCCAAAATTGGCAAGGTGATCCATGCGCTCCTGTAGCATACATGTGGGAGGGTCTAAATTGTAATTTTAATGGCACCCCAAGAATCACATCCTTGAATTTATCTTCAAGAGGACTCACTGGACACATAGCAGTTTATATCTCCAAGCTTACTGAGTTAGAGTCCTTGGATTTATCAAATAATAGCTTAATTGGGGAGATACCTGTTTTTCTGGTAGAAAATCTGCCATCGCTTAGAGTCCTAAACTTGCAGAATAACAACCTCACAGGTCTAATTCCAAATGCACTTCTCCAAAAGTCAAGTGAAGGTGTACTATCACTTAGGTTGGGGCAAAATCCAAGTCTATGTGAATCTGGTCCTTGTGACCAACAGACAAAGGATAAAAGCAAGGAAAACAATTCAGTTATTTATATACTAGCATCTGTTTCTGCATTTTTGATGCTCTTACTGGTAGTTCTTGCAGCAGTCAACATCATTTACATTAAAAAGAGAAAGCTAAAAGATGATGTCTACATTCATATGGAATCTGGTGATCCTTTGGAATCCAAGCGCCGACAATATTCATTCGATGAAGTTGTTAACATGACCAATAACTTCGAAAAAGTCCTCGGTAYAGGTGGATTTGGAACAGTTTACTATGGCATTATTGATYATATTCCAGTAGCTGTRAAGATGCTTTTGCAATCATCAGTACAAGGATATCAGGAATTTCTTGCAGAGGTTAAATTTTTTATGAGGGTTCACCACAGAAACCTGACTTCTCTGATTGGATACTGCAATGAAGACGACAACATAGGGCTCATCTATGAATATATGGCAAATGGGAACCTCAATGAACATCTTTCAGGAAAAACTACCCGGAAAAAATTCTTAACTTGGGAGGACAGACTCCAAATAGCAGTGGATGTAGCCCAAGGATTGGAATATCTGCATAGTGGTTGCAAGCCACCTATAATCCACAGAGATYTAAAATGTACAAACATTTTGTTAAATGAAAACTTTCAAGCAAAATTGGCGGATTTAGGCCTCTCCAAAAGCTTCATTTTCAGTGGAGACACACATGTGTCCACTATGGTTGCTGGAACTCCTGGCTACCTTGATCCAGAGTACCAAACATCAAATAAATTAACAGAAAAAAGTGATGTGTATAGTTTTGGAGTAGTCCTTTTGAAGATAATCACAGGTGAAGCAGCAGCAGCATCAAAAGCACATAACAATGCTCACATAAGTCAGTGGGTGGGTTCTGTGGTTGCTAGAGGGGACATAGAACGTATTGTAGACCCAAGCTTAGAAGGAGATTTCGACATTTATTCTGCATGGAAAGCAGTTGAAGTAGCAATGGCATGTGTCTCRATTAGTTCTAAAGAAAGGCCGTACATGAGAGATGTTTTYGTMGAGCTYAAGGAGTGTTTGGCGGTGGAATCAGCTCGGAAAAATGTTGGCGCCAAAGATTCAAATGAGTTGGTTACCATGAATCCAGTTACTGAAATTAGTCCCATAGCTAGATAG 2658 0.3886 MRMLMHLLFVMLGVVTSGLLVQTQFQSGFISIDCGLPEGKDYTEKSTGINYISDTNFIDSGVSKMVSSEDKITHQQQFSYLRSFPNGMRNCYKISVTSGTKYLIRASFLYGNYDGLNEPPQFDIHLGSNLWDTVKLTNASQSSYRELMHTPTLNYVHICLVNTGNGIPFISAIEFRNMDFNNVYKTSGATTLARLAGLDFGSFTNLTYRYMDDFHDRLWEPYSNDQWAQLHNPINNDLPSRDYELPISVIWTAATPRNANGVSLDFYFDALNETTQQQCYFYLHFAEVQKLAPNETREFNITLNGEDFYNLLRPGHFVNTIFDPSPYNVFYKNNNISLVKTEASTLPPIINALEIYQVKDFSQLETQQDDVDAITNIKKVYRVTQNWQGDPCAPVAYMWEGLNCNFNGTPRITSLNLSSRGLTGHIAVYISKLTELESLDLSNNSLIGEIPVFLVENLPSLRVLNLQNNNLTGLIPNALLQKSSEGVLSLRLGQNPSLCESGPCDQQTKDKSKENNSVIYILASVSAFLMLLLVVLAAVNIIYIKKRKLKDDVYIHMESGDPLESKRRQYSFDEVVNMTNNFEKVLGXGGFGTVYYGIIDXIPVAVKMLLQSSVQGYQEFLAEVKFFMRVHHRNLTSLIGYCNEDDNIGLIYEYMANGNLNEHLSGKTTRKKFLTWEDRLQIAVDVAQGLEYLHSGCKPPIIHRDLKCTNILLNENFQAKLADLGLSKSFIFSGDTHVSTMVAGTPGYLDPEYQTSNKLTEKSDVYSFGVVLLKIITGEAAAASKAHNNAHISQWVGSVVARGDIERIVDPSLEGDFDIYSAWKAVEVAMACVSISSKERPYMRDVFVELKECLAVESARKNVGAKDSNELVTMNPVTEISPIAR* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0316 885 CDD STKc_IRAK 586 852 - -
Amo09g0316 885 Gene3D Phosphorylase Kinase; domain 1 562 654 - -
Amo09g0316 885 ProSiteProfiles Protein kinase domain profile. 580 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g0316 885 ProSitePatterns Serine/Threonine protein kinases active-site signature. 701 713 IPR008271 GO:0004672|GO:0006468
Amo09g0316 885 ProSitePatterns Protein kinases ATP-binding region signature. 586 607 IPR017441 GO:0005524
Amo09g0316 885 ProSiteProfiles Leucine-rich repeat profile. 460 481 IPR001611 GO:0005515
Amo09g0316 885 SMART LRR_typ_2 433 457 IPR003591 -
Amo09g0316 885 SMART LRR_typ_2 458 481 IPR003591 -
Amo09g0316 885 PANTHER OS07G0107800 PROTEIN-RELATED 19 884 - -
Amo09g0316 885 Gene3D Transferase(Phosphotransferase) domain 1 655 875 - -
Amo09g0316 885 Gene3D Ribonuclease Inhibitor 371 488 IPR032675 -
Amo09g0316 885 SUPERFAMILY Protein kinase-like (PK-like) 564 849 IPR011009 -
Amo09g0316 885 Pfam Protein tyrosine and serine/threonine kinase 582 789 IPR001245 GO:0004672|GO:0006468
Amo09g0316 885 SMART serkin_6 580 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo09g0316 885 SUPERFAMILY L domain-like 368 481 - -
Amo09g0316 885 PRINTS Leucine-rich repeat signature 458 471 - -
Amo09g0316 885 PRINTS Leucine-rich repeat signature 436 449 - -
Amo09g0316 885 Pfam Leucine rich repeat 435 479 IPR001611 GO:0005515
Amo09g0316 885 Pfam Malectin-like domain 32 358 IPR024788 -
Amo09g0316 885 PANTHER PUTATIVE-RELATED 19 884 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0316 Amo-Chr9 3725922 3730851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0316 7 885 Receptor kinase-like Gene Family AT1G51800 46.923 0.0 781
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Amo09g0316 Malectin_like 8.9e-102 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0316 - - gmx:100779474 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0386 19 5060383 5064519 Amo09g0316 09 3725922 3730851 hybridization
Amo19g0380 19 5002259 5008455 Amo09g0316 09 3725922 3730851 hybridization
Amo18g0247 18 3553118 3560545 Amo09g0316 09 3725922 3730851 PCT