Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0312 ATGTACTCTGAAAATCTGATAGTGTCCGCTGAAAACTCTAGACCCTTCGCGTTTCAGCAACATCTGTCTTCTTCTTCGTCTACTACTACTTCGGCCAACGCGAAACCCATGAGCAATGAGATCGCACAGATGCCTCCCCCTTCCACTCTCGGTTGCAGGTTCAAGGCTATGCTCAAGCTGCGCGACGACGAGCTCAGGGCCACCGCCGGTCACGTGCCCCCTCCGTCTACGGAAGAAATCGTTCAGCTGTACGAGATGCTGCTGTCGGAGCTCACGTCCAATCAGAAGCTCATTATCAACGATCTCACCTTAATCGCTGTGCACCAGAGGGAGCATGCCAGGGGCATCGCCGACGCTATCTGCGCTCGGATTCTCAAGGTGCCTGCAGAGCAAAAGCTTCCTTCACTCTATCTCTTGGACAGTATAGTGAAGAACTTTGGACAGGAATATGTTACAAACTTTGCATTACGCCTGCCCGAAGTTTTCTGTGAGGCATACAGGCAGGTTCAGCCTCATTTGCACCCTGCTATGCGCCATCTCTTTGACACCTGGTCAGAAGTCTTTCCACCGTCTGCCCAACGCAAGATTGAAGCTGAGTTGCAACTTTCTCAAGTAGTTAATAATAGTCAATCGTCCAACATGAATCCCCTCAGAGCATCTGAATCTCCTAGTCCAAGTCATGGCATACATGTAAATCCAAAGTACCTGCAGCAGTTGGAGCGCTCAACTGTGGATAGTACAAGGGGGAAAAAATGGTGTGGCTTATTCGTCGGGGATGATTGTGTGCAAGAGGAGCTGCTTGAAAAAGCTGTTCCAGGAGATGATGATGGTGAAAGGAAAATGAACTTTGCATGGCGGGTGGACAAGATGGGAGCAGACATTAGAAATCTGAAATTCATGACTCAAGTTCTTGGGTTTGGGTTGTTGGTAGTTGTAGTTTTAGTAGGAATGGTGCTCTTAAAGAGTTGA 969 0.4871 MYSENLIVSAENSRPFAFQQHLSSSSSTTTSANAKPMSNEIAQMPPPSTLGCRFKAMLKLRDDELRATAGHVPPPSTEEIVQLYEMLLSELTSNQKLIINDLTLIAVHQREHARGIADAICARILKVPAEQKLPSLYLLDSIVKNFGQEYVTNFALRLPEVFCEAYRQVQPHLHPAMRHLFDTWSEVFPPSAQRKIEAELQLSQVVNNSQSSNMNPLRASESPSPSHGIHVNPKYLQQLERSTVDSTRGKKWCGLFVGDDCVQEELLEKAVPGDDDGERKMNFAWRVDKMGADIRNLKFMTQVLGFGLLVVVVLVGMVLLKS* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0312 322 ProSiteProfiles CID domain profile. 76 204 IPR006569 -
Amo09g0312 322 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 48 247 - -
Amo09g0312 322 SUPERFAMILY ENTH/VHS domain 75 199 IPR008942 -
Amo09g0312 322 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 48 247 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Amo09g0312 322 CDD CID_Pcf11 81 200 - -
Amo09g0312 322 SMART 558neu5 79 201 IPR006569 -
Amo09g0312 322 Pfam CID domain 86 189 IPR006569 -
Amo09g0312 322 Gene3D - 74 202 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0312 Amo-Chr9 3678456 3681469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0312 53 247 C2H2 Transcription Factor Family AT4G04885 60.000 2.02e-70 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0312 K14400 - gmx:100787354 322.783