Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0278 ATGTTAATTAGGGTTTCTCCATCGTATTATATAATGGTCTATAAGAACCCTAATTCTGTGTTGCAGTCGAAGAAGGAGAAGATGACGACTGTTCCAGGGCAATTGGTGTGGGAGATCGTGAAGAAGAACAACTGCTTCTTGGTGAAAGAGTTCGGAAGGGGCACTCAGAGTGTTGAATTCAGCAGAGAGCCTAACAATCTCTACAATCTCAACTCCTTTAAATACTCAGGTTTGGCAAACAAGAAAACTGTTACCATTCAGCCTGCTGGTAAGGATCAGGGTGTGTTGTTGGCTACAACCAAGACCAAGAAGCAGAACAAGCCTTCTGCTCTTCTTCACAAGTCTCTGATGAAGAAGGAGTTCAGTAGGATGGCTAAGGCTGTTCAAAATCAGGTGTCAAAAAACCACTACAGGCCTGATCTCACTAATGCAGCTCTTGCAAGGTTGAGTGCCGTCAATAGAAGCATCAGAGTTGCCAAGTCTGGTGTCAAGAAGAGGAACAGACAGGGCTTGAAGATCCGTGGCAGGAAGTGGAAGTGA 540 0.4481 MLIRVSPSYYIMVYKNPNSVLQSKKEKMTTVPGQLVWEIVKKNNCFLVKEFGRGTQSVEFSREPNNLYNLNSFKYSGLANKKTVTIQPAGKDQGVLLATTKTKKQNKPSALLHKSLMKKEFSRMAKAVQNQVSKNHYRPDLTNAALARLSAVNRSIRVAKSGVKKRNRQGLKIRGRKWK* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0278 179 PANTHER 60S RIBOSOMAL PROTEIN L28 28 177 IPR002672 GO:0003735|GO:0005840|GO:0006412
Amo09g0278 179 Gene3D - 33 160 - -
Amo09g0278 179 PANTHER 60S RIBOSOMAL PROTEIN L28-1-LIKE 28 177 - -
Amo09g0278 179 Pfam Ribosomal L28e protein family 35 155 IPR029004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0278 Amo-Chr9 3219673 3222627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0278 28 170 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 71.329 5.59e-74 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0278 K02903 - gmx:100499963 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0423 19 5712280 5715273 Amo09g0278 09 3219673 3222627 hybridization
Amo19g0423 19 5712280 5715273 Amo09g0278 09 3219673 3222627 PCT
Amo09g0278 09 3219673 3222627 Amo19g0423 19 5712280 5715273 PCT
Amo09g0278 09 3219673 3222627 Amo09g0278 09 3219673 3222627 PCT